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Issues list

Kallisto specificity
#108 opened May 12, 2016 by shrukane
2
Fail with Cmake BUILD_TESTING=ON on hold
#57 opened Jun 15, 2015 by eroberson
4
No minimum version on HDF5 libraries on hold
#58 opened Jun 16, 2015 by pmelsted
@pimentel
1
Pseudobam output (very) occasionally prints two alignments in one line unable to reproduce
#70 opened Aug 18, 2015 by vals
1
testing environments benchmarks
#74 opened Aug 25, 2015 by pimentel
./kallisto: error while loading shared libraries: libhdf5.so.7: cannot open shared object file:
#79 opened Aug 31, 2015 by stephenturner
3
--thread option fails on Ubuntu14.04 source build
#82 opened Oct 2, 2015 by peterdfields
11
Give helpful error message when no reads align feature
#84 opened Oct 16, 2015 by pimentel
1
take interleaved files, perhaps on stdin
#89 opened Oct 29, 2015 by macmanes
2
uninformative error when using -s 0
#96 opened Jan 4, 2016 by mschilli87
6
enable building kallisto without HDF5
#97 opened Jan 5, 2016 by mschilli87
1
counting numbers of expressed transcripts
#101 opened Feb 9, 2016 by bprabin
1
hdf5 bootstrap representation discussion feature
#44 opened May 19, 2015 by mtmorgan
4
finding pseudoalignments for the reads ...Segmentation fault (core dumped)
#105 opened Mar 25, 2016 by aungthurhahein
12
UMI mode - Internal Demultiplexing?
#111 opened Jun 3, 2016 by vals
3
stdout result and platform independent
#112 opened Jun 16, 2016 by rhinempi
1
need documentation on batch mode outputs
#113 opened Jun 24, 2016 by stephenturner
1
Transcriptome ID mismatch in abundance files
#116 opened Aug 10, 2016 by jynewberg
2
Mismatches to the Reference
#118 opened Sep 8, 2016 by DarioS
1
build failure: include path for hdf5 is not passed from cmake to gcc
#121 opened Oct 16, 2016 by angli232
RNA-Seq gene fusion calling
#122 opened Oct 28, 2016 by schelhorn
8
Running EM algorithm in pseudo mode
#126 opened Dec 12, 2016 by pwl
'kallisto quant --threads=60' runs on one core for hours
#128 opened Feb 16, 2017 by taltman
5
kallisto quant reports an error "Error: kallisto index file missing Error: file not found –i"
#140 opened Jul 7, 2017 by Stephaniedv
2
Using kb-python for mars-seq
#437 opened May 10, 2024 by sam-shariati
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