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Issues list

Facing issues while building on PPC64LE architecture.
#431 opened Apr 3, 2024 by vinodk99 updated Jun 15, 2024
7
Using kb-python for mars-seq
#437 opened May 10, 2024 by sam-shariati updated May 10, 2024
kallisto 0.50.0 can't index
#411 opened Nov 2, 2023 by dariolez updated May 1, 2024
14
Question about kallisto indexes
#435 opened Apr 24, 2024 by st4302 updated Apr 25, 2024
1
kallisto gene vs transcript count
#434 opened Apr 15, 2024 by Rajesh-HKU updated Apr 15, 2024
4
Low alignment rate even though STAR aligns almost all reads
#198 opened Feb 4, 2019 by chrarnold updated Mar 15, 2024
17
Kallisto handling multiple reads from single transcript?
#428 opened Mar 5, 2024 by stromk updated Mar 5, 2024
1
Kallisto for Parsebio
#427 opened Feb 28, 2024 by rootze updated Feb 28, 2024
1
kallisto 0.50.1 fails with "Illegal instruction" when built on machines with AVX-512
#424 opened Feb 14, 2024 by stianlagstad updated Feb 14, 2024
2
failed to build code
#303 opened Apr 9, 2021 by FabianaRossi updated Feb 1, 2024
7
is it the 'clipped off poly-A tail' and 'clipped off poly-A tail' right?
#422 opened Jan 8, 2024 by Bianzh1024 updated Jan 10, 2024
1
Kallisto total UMI difference between velocity and novelocity modes. (single cell)
#419 opened Dec 11, 2023 by mortunco updated Jan 4, 2024
4
Mapping kallisto equivalence classes to actual transcript sequences
#421 opened Dec 18, 2023 by rubenchazarra updated Dec 18, 2023
8
kallisto quant 0.50.1 linux, illegal instruction
#420 opened Dec 14, 2023 by deborah-chasman updated Dec 15, 2023
1
estimate read counts of a specific region of a transcript
#417 opened Nov 20, 2023 by zixuanxie updated Nov 20, 2023
1
UMI count per gene
#408 opened Oct 26, 2023 by tsofiya updated Nov 15, 2023
8
Change STORM-seq to uppper case for compatibility with kb_python
#415 opened Nov 13, 2023 by genomics-kl updated Nov 13, 2023
A few minor patches for portability
#413 opened Nov 4, 2023 by outpaddling updated Nov 4, 2023
Kallisto process killed or computer freezes while indexing
#405 opened Oct 23, 2023 by hkarakurt8742 updated Oct 23, 2023
1
Incompatible indices error message seems to refer to incorrect version numbers
#400 opened Sep 25, 2023 by jdreyf updated Sep 25, 2023
3
pseudoaln.bin and tmp.x.bam output files.
#282 opened Sep 20, 2020 by amv33576 updated Sep 13, 2023
3
Kallisto not able to find the index file or abundance.tsv
#397 opened Sep 9, 2023 by swinnier updated Sep 11, 2023
3
does kallisto require unsorted reads?
#396 opened Sep 5, 2023 by anoronh4 updated Sep 8, 2023
6
Documentation out of date
#392 opened Aug 14, 2023 by mfansler updated Aug 14, 2023
3
Feature request: Add support for xz and zstd
#383 opened Jun 21, 2023 by outpaddling updated Jun 21, 2023
ProTip! What’s not been updated in a month: updated:<2024-05-25.