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Issues list

testing environments benchmarks
#74 opened Aug 25, 2015 by pimentel
build failure: include path for hdf5 is not passed from cmake to gcc
#121 opened Oct 16, 2016 by angli232
Running EM algorithm in pseudo mode
#126 opened Dec 12, 2016 by pwl
automated inference of sequencing library types
#154 opened Jan 17, 2018 by borauyar
Inflated UMI counts using --umi mode
#156 opened Feb 1, 2018 by leonfodoulian
0.44.0 parallelized build failure
#160 opened Feb 16, 2018 by ilovezfs
0.44.0 cannot use system htslib
#161 opened Feb 16, 2018 by ilovezfs
Are paired and single end read files supported together?
#162 opened Feb 17, 2018 by winni2k
cc1plus: error: /src/htslib: No es un directorio
#178 opened Jul 30, 2018 by soporteCluster
Kallisto --fusion detection single reads
#180 opened Aug 8, 2018 by FabianGrammes
feature request: add "effective length" in kallisto pseudo outputs
#185 opened Oct 1, 2018 by YulongNiu
Feature request: include hdf5 library version as attribute in H5 file and run_info JSON
#191 opened Nov 28, 2018 by warrenmcg
PE read names in pseudobam
#206 opened Apr 10, 2019 by goranrakocevic
kallisto index freezes on Ensembl database
#210 opened May 22, 2019 by clydeandforth
kallisto quant --pseudobam and --genomebam produce file with same name
#220 opened Jul 12, 2019 by NemanjaVucic90
kallisto velocity pipeline bug ?!
#242 opened Dec 24, 2019 by hmassalha
how to change a GEO integrated dataset into kallisto files which can be import by R-tximport.
#243 opened Jan 4, 2020 by 13mhzeng
kallisto bus parsing barcode length to be 0
#250 opened Feb 13, 2020 by caleblareau
Synopsis text for kallisto merge is wrong
#251 opened Feb 23, 2020 by tseemann
Missing valid cells
#255 opened Mar 14, 2020 by CFrangieh
bug in ext/htslib/configure.ac
#257 opened Mar 26, 2020 by nadyawilliams
process 10xv2 single end read fastq files
#263 opened May 13, 2020 by ChaDuss
questions regarding building index including introns
#264 opened May 13, 2020 by jingzhangorg
What is the equivalent or most similar -x preset for 10x 5' chem
#266 opened Jun 5, 2020 by liu-xingliang
Smart-seq3 support in kallisto bus
#267 opened Jun 10, 2020 by winni2k
ProTip! Updated in the last three days: updated:>2024-06-22.