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stdout result and platform independent #112
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Just finish benchmarking 3.1TB fastq.bz2 (~10TB raw) file to human transcript reference, decompressing plus kallistoing in 40mins. kallisto is faster than decompressing. |
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Hi, I am currently working on a cloud application using kallisto.
The main issue are:
1, I am using cloud framework to mange fastq data distribution thus send and recieving data through stdin and stdout avoiding massive data IO. But, kallisto output a directory that can not by redirect to stdout. I modified the source code and changed the out put stream to stdout. But this brings the second question:
2, the compiled binary need a hdf5 library as a dependency, which is unsuitable for the concept of cloud as Platfor independent in multiple distributed computers.
I would be appreciated if someone could give me an idea or workaround.
Thanks!
Liren
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