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Issues list

Different number of line in the bedMethyl table among samples question Looking for clarification on inputs and/or outputs
#77 opened Nov 7, 2023 by HeleneMeMartin
1
Question about afterwork using modkit result & indexing bedMethyl files for igv question Looking for clarification on inputs and/or outputs
#84 opened Nov 17, 2023 by hyunjokoo
1
pileup does not allow gzipped reference sequence enhancement New feature or request
#100 opened Dec 14, 2023 by KloostermanJoukje 0.2.5
1
IGV visualization of bedMethyl file
#104 opened Dec 24, 2023 by MaestSi
1
Issue with coordinates in modkit pileup
#135 opened Feb 19, 2024 by ccastignani
1
Is there a way to run dmr pair with multiple replicates with a region BED file? enhancement New feature or request
#143 opened Mar 7, 2024 by lance0499
1
Feature request: Auto bgzip/tabix a pileup
#144 opened Mar 7, 2024 by billytcl
1
Multiple testing correction: modkit dmr question Looking for clarification on inputs and/or outputs
#148 opened Mar 14, 2024 by ericmsmall
1
Parallelization question Looking for clarification on inputs and/or outputs
#150 opened Mar 25, 2024 by martabaragli
1
question about how to define the DRACH-motif question Looking for clarification on inputs and/or outputs
#161 opened Apr 11, 2024 by mocherry
1
Question about CpGs without modification question Looking for clarification on inputs and/or outputs
#164 opened Apr 16, 2024 by VasLem
1
threshold and motifs enhancement New feature or request question Looking for clarification on inputs and/or outputs
#166 opened Apr 17, 2024 by TiBi-MU
1
Multi-base entropy enhancement New feature or request
#205 opened Jun 11, 2024 by Ge0rges
1
request feature in modkit call-mods enhancement New feature or request
#227 opened Jul 8, 2024 by sathish-t
1
Difficulties to run modkit with the modbases tutorial question Looking for clarification on inputs and/or outputs
#49 opened Aug 31, 2023 by marceelrf
2
Question about mod_qual value in modkit extract question Looking for clarification on inputs and/or outputs
#95 opened Dec 10, 2023 by liliaevgeniou
2
Modkit BED file impropperly formatted.
#108 opened Jan 5, 2024 by KloostermanJoukje
2
How to construe rna004 model [email protected]_DRACH bedMethyl output?
#109 opened Jan 9, 2024 by kir1to455
2
High failed calls
#116 opened Jan 19, 2024 by yifengyuan
2
Feature request: read from url enhancement New feature or request
#123 opened Jan 31, 2024 by wdecoster
2
Modification summary per BED line enhancement New feature or request
#154 opened Apr 5, 2024 by davidsilvapires
2
How to detect the background noise from control and test samples question Looking for clarification on inputs and/or outputs
#172 opened Apr 24, 2024 by xiangpingyu
2
Validation with ground truth
#177 opened May 1, 2024 by vyx-lucy-kaplun
2
bedgraph and bedmethyl only-tab simultaneously enhancement New feature or request
#210 opened Jun 18, 2024 by ShokodkoMariia
2
Where does P(canonical) come from? question Looking for clarification on inputs and/or outputs
#219 opened Jun 27, 2024 by lkwhite
2
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