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Issues list

pileup does not allow gzipped reference sequence enhancement New feature or request
#100 opened Dec 14, 2023 by KloostermanJoukje 0.2.5
1
Unable to install on Ubuntu 20 (Illegal instruction in VM)
#26 opened Jun 5, 2023 by jcolicchio-soundag
12
modkit pileup bed output file has space delimited columns 10-18 and tab delimited 1-9
#43 opened Aug 10, 2023 by nextgenusfs
20
Difficulties to run modkit with the modbases tutorial question Looking for clarification on inputs and/or outputs
#49 opened Aug 31, 2023 by marceelrf
2
Different number of line in the bedMethyl table among samples question Looking for clarification on inputs and/or outputs
#77 opened Nov 7, 2023 by HeleneMeMartin
1
Probability threshold question Looking for clarification on inputs and/or outputs
#80 opened Nov 8, 2023 by NickNCL
5
Question about afterwork using modkit result & indexing bedMethyl files for igv question Looking for clarification on inputs and/or outputs
#84 opened Nov 17, 2023 by hyunjokoo
1
Is there an easy way to generate % methylation by read position? question Looking for clarification on inputs and/or outputs
#87 opened Nov 22, 2023 by billytcl
6
Feature request? Position-dependent thresholding
#88 opened Nov 23, 2023 by billytcl
4
dmr multi still looks for --regions
#90 opened Nov 28, 2023 by Ge0rges
8
Clearer A and B notation
#91 opened Nov 28, 2023 by Ge0rges 0.2.5
3
modkit pileup filter-threshold results in different calls question Looking for clarification on inputs and/or outputs
#92 opened Nov 29, 2023 by mattloose
5
Segfault on the cliveome
#9 opened May 3, 2023 by mp15
6
Question about mod_qual value in modkit extract question Looking for clarification on inputs and/or outputs
#95 opened Dec 10, 2023 by liliaevgeniou
2
Modkit DMR Pair: Process Killed, No Output
#103 opened Dec 22, 2023 by handoko12u
9
IGV visualization of bedMethyl file
#104 opened Dec 24, 2023 by MaestSi
1
Modkit BED file impropperly formatted.
#108 opened Jan 5, 2024 by KloostermanJoukje
2
Recommended way to include modkit as a dependency for a multi-platform python package extract modkit extract question Looking for clarification on inputs and/or outputs
#113 opened Jan 17, 2024 by OberonDixon
5
High failed calls
#116 opened Jan 19, 2024 by yifengyuan
2
modkit extract takes very long enhancement New feature or request extract modkit extract
#119 opened Jan 24, 2024 by pkerbs
6
Feature request: read from url enhancement New feature or request
#123 opened Jan 31, 2024 by wdecoster
2
modkit dmr function question Looking for clarification on inputs and/or outputs
#125 opened Feb 7, 2024 by bebert30
4
MN tag length and seq length don't match for 99.9% of reads
#128 opened Feb 14, 2024 by ddubocan
3
Skipped: AUX data not found for methylation
#131 opened Feb 15, 2024 by vzg100
9
What positions are included in bedMethyl files? Should there be only C in a 5mC_5hmC model bedMethyl file?
#238 opened Jul 23, 2024 by Adinivich
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