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Issues list

Comparison between modkit and modbam2bed.
#14 opened May 9, 2023 by qiangfu-eu
31
failed to get modbase info for record ..., Skipped: AUX data not found troubleshooting workflow and data preparation questions
#159 opened Apr 10, 2024 by ArnavBharti
22
modkit pileup bed output file has space delimited columns 10-18 and tab delimited 1-9
#43 opened Aug 10, 2023 by nextgenusfs
20
Detect methylation data background noise question Further information is requested
#147 opened Mar 14, 2024 by Macdot3
13
Clarifications on DMR Analysis DMR modkit dmr question Further information is requested
#191 opened May 27, 2024 by Proy321
12
failed to get modbase info ... skipped: AUX data not found
#134 opened Feb 16, 2024 by vetmohit89
12
Unable to install on Ubuntu 20 (Illegal instruction in VM)
#26 opened Jun 5, 2023 by jcolicchio-soundag
12
Obtain Global methylation level of the genome question Further information is requested
#173 opened Apr 25, 2024 by OceaneMion
9
Skipped: AUX data not found for methylation
#131 opened Feb 15, 2024 by vzg100
9
Modkit DMR Pair: Process Killed, No Output
#103 opened Dec 22, 2023 by handoko12u
9
polars script modkit extract question Further information is requested
#133 opened Feb 16, 2024 by Macdot3
8
dmr multi still looks for --regions
#90 opened Nov 28, 2023 by Ge0rges
8
Are all CpG reported ? question Further information is requested
#192 opened May 28, 2024 by OceaneMion
7
Inconsistent results when using call-mods + pileup or pileup directly
#132 opened Feb 16, 2024 by ppapasaikas
7
modkit dmr - failed to read tabix index build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#178 opened May 2, 2024 by lilypeck
6
Perform mean of probability for each read position with modkit extract question Further information is requested
#163 opened Apr 16, 2024 by OceaneMion
6
Is there an easy way to generate % methylation by read position? question Further information is requested
#87 opened Nov 22, 2023 by billytcl
6
Segfault on the cliveome
#9 opened May 3, 2023 by mp15
6
bedMethyl file has no motif information question Further information is requested
#216 opened Jun 20, 2024 by uuwuyi
5
dmr multi failed to load samples build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#207 opened Jun 13, 2024 by nickst85
5
How does Modkit handle Large Genome Data? question Further information is requested troubleshooting workflow and data preparation questions
#190 opened May 27, 2024 by Yang990-sys
5
Recommended way to include modkit as a dependency for a multi-platform python package extract modkit extract question Further information is requested
#113 opened Jan 17, 2024 by OberonDixon
5
modkit pileup filter-threshold results in different calls question Further information is requested
#92 opened Nov 29, 2023 by mattloose
5
DMR without pileup question Further information is requested
#183 opened May 16, 2024 by ArnavBharti
4
modkit dmr function question Further information is requested
#125 opened Feb 7, 2024 by bebert30
4
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