Skip to content

Issues: nanoporetech/modkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

69 Open 145 Closed
69 Open 145 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

bedMethyl file has no motif information troubleshooting workflow and data preparation questions
#216 opened Jun 20, 2024 by uuwuyi
3
extract options question Further information is requested
#215 opened Jun 20, 2024 by Baix7
2
entropy vs sequencing depth/CG content question Further information is requested
#214 opened Jun 20, 2024 by ywang285
2
Diffrent threshold from dorado models troubleshooting workflow and data preparation questions
#212 opened Jun 19, 2024 by Macdot3
3
Zero reads in index error troubleshooting workflow and data preparation questions
#211 opened Jun 19, 2024 by setshabaTaukobong
1
bedgraph and bedmethyl only-tab simultaneously enhancement New feature or request
#210 opened Jun 18, 2024 by ShokodkoMariia
2
Error! Parsing Error: Error { input: "m\t1", code: Digit } troubleshooting workflow and data preparation questions
#209 opened Jun 18, 2024 by saky7009
3
Getting error when running modkit dmr pair bug Something isn't working build-available custom build produced for fix.
#208 opened Jun 16, 2024 by agoel13
4
dmr multi failed to load samples build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#207 opened Jun 13, 2024 by nickst85
5
Multi-base entropy enhancement New feature or request
#205 opened Jun 11, 2024 by Ge0rges
1
modkit call-mods omits all modification information for many RNA004 reads bug Something isn't working build-available custom build produced for fix.
#202 opened Jun 11, 2024 by pre-mRNA
4
Can you please suggest me ..How can I visualized differential methylation result?
#199 opened Jun 6, 2024 by saky7009
3
pseudouridylation extracting question Further information is requested
#193 opened May 31, 2024 by Papareddy
2
Are all CpG reported ? question Further information is requested
#192 opened May 28, 2024 by OceaneMion
6
Clarifications on DMR Analysis DMR modkit dmr question Further information is requested
#191 opened May 27, 2024 by Proy321
12
How does Modkit handle Large Genome Data? question Further information is requested troubleshooting workflow and data preparation questions
#190 opened May 27, 2024 by Yang990-sys
5
error: unrecognized subcommand 'find-motifs' (Find highly modified motif sequences) question Further information is requested
#187 opened May 23, 2024 by saky7009
2
DMR without pileup question Further information is requested
#183 opened May 16, 2024 by ArnavBharti
4
What is exactly mod_qual? question Further information is requested
#181 opened May 12, 2024 by OceaneMion
3
num-reads not working troubleshooting workflow and data preparation questions
#179 opened May 5, 2024 by ShokodkoMariia
3
modkit dmr - failed to read tabix index build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#178 opened May 2, 2024 by lilypeck
6
Validation with ground truth
#177 opened May 1, 2024 by vyx-lucy-kaplun
2
Perform DMR analysis on the same file question Further information is requested
#174 opened Apr 26, 2024 by OceaneMion
3
Obtain Global methylation level of the genome question Further information is requested
#173 opened Apr 25, 2024 by OceaneMion
9
How to detect the background noise from control and test samples question Further information is requested
#172 opened Apr 24, 2024 by xiangpingyu
2
ProTip! Follow long discussions with comments:>50.