4 Issues closed by 3 people

• m6A analysis

  #290 closed Nov 4, 2024

• Parsing input error

  #231 closed Nov 3, 2024

• `dmr multi` still looks for `--regions`

  #90 closed Nov 3, 2024

• Modification summary per BED line

  #154 closed Oct 30, 2024

3 Issues opened by 3 people

• Using segmenting on differential methylation

  #295 opened Nov 5, 2024

• bedMethyl index missing in dmr multi with replicates

  #294 opened Nov 5, 2024

• Documentation ambiguity

  #293 opened Oct 31, 2024

5 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• how is calculate valid_coverage ? Different results between total read or subsample reads

  #292 commented on Oct 31, 2024 • 0 new comments

• result from "modkit pileup" command

  #288 commented on Oct 31, 2024 • 0 new comments

• modkit dmr pair of pileup bed file subset to 4mC

  #279 commented on Nov 1, 2024 • 0 new comments

• Number of reads processed by modkit

  #241 commented on Nov 1, 2024 • 0 new comments

• Perform mean of probability for each read position with modkit extract

  #163 commented on Nov 1, 2024 • 0 new comments