5 Issues closed by 4 people

• Error when running tabix -p bed pileup.bed.gz

  #236 closed Jul 22, 2024

• How to construe rna004 model [email protected]_DRACH bedMethyl output?

  #109 closed Jul 22, 2024

• How to interpret the results from modkit sample-probs --hist on same RNA datasets bascalled with two different m6A models?

  #228 closed Jul 19, 2024

• modkit extract: OUT_PATH versus READ-CALL-PATH tables

  #230 closed Jul 19, 2024

• request feature in modkit call-mods

  #227 closed Jul 17, 2024

4 Issues opened by 4 people

• What positions are included in bedMethyl files? Should there be only C in a 5mC_5hmC model bedMethyl file?

  #238 opened Jul 23, 2024

• Ignore multiple mods in adjust-mods

  #237 opened Jul 22, 2024

• Support for generic MM tags?

  #235 opened Jul 19, 2024

• modkit results look off for CHG and CHH contexts - plant methylation

  #234 opened Jul 19, 2024

2 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• Criteria for deciding whether a position is methylated

  #224 commented on Jul 19, 2024 • 0 new comments

• Find-motifs error: memory allocation of 61203283984 bytes failed

  #225 commented on Jul 19, 2024 • 0 new comments