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DMR without pileup #183
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Hello @ArtRand @marcus1487 Thanks |
What makes your modBAM incompatible with @Proy321 and @ArnavBharti, If you format your BED file so that the columns are the same as the bedMethyl table used by
Everything up to |
Hello @ArtRand
Will it be possible to run modkit dmr with this? Thanks |
You'll have to add or compute the missing values and remove the unnecessary ones. For example, you should know the modification code (or check the SAM spec).
Just make sure it's in the same order as the output from pileup. |
Hey, I have (summary) BED files and I wanted to know if I necessarily need the bed file from pileup to run dmr. The samples I have is not compatible with modkit pileup.
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