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Getting error when running modkit dmr pair #208
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Hello @agoel13, Sorry about that. Could you try the attached build and tell me if you continue to encounter the crash? |
Many thanks. Completed successfully without any error msgs. |
@agoel13 Great. Yes this fix and a few others will be released this week. Thanks for testing it! |
Thanks. Looking forward to it. |
This fix has been released in v0.3.1. |
Hi,
I am trying to run modkit (v0.3.0) dmr pair using replicates and getting following error
Error msg :
running with replicates, but not matched samples
thread 'main' panicked at src/hmm.rs:330:9:
e_s is not finite -inf
note: run with
RUST_BACKTRACE=1
environment variable to display a backtraceFor your reference here is my script:
modkit dmr pair
-a Norm1.bed.gz
-a Norm2.bed.gz
-b Tum1.bed.gz
-b Tum2.bed.gz
-b Tum3.bed.gz
-b Tum4.bed.gz
-o dmr_replicates_pair_segment.bed
--header
--segment dmr_segements.bed
--ref hg38.fa
--base C
--threads 16
--log-filepath dmr_pair_segment.log
While when I run the same script with only one pair of samples and no replicates, it completes without any errors.
PS: Without turning on the segment argument, the above script runs fine.
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