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Issues list

find-motifs fails to load before_file question Further information is requested
#218 by Ge0rges was closed Jun 24, 2024
2
extract options question Further information is requested
#215 by Baix7 was closed Jun 24, 2024
4
Contig names source question Further information is requested
#213 by Ge0rges was closed Jun 19, 2024
2
Getting error when running modkit dmr pair bug Something isn't working build-available custom build produced for fix.
#208 by agoel13 was closed Jun 24, 2024
5
How to generate hydroxymethylation in pileup? question Further information is requested
#206 by weishwu was closed Jun 18, 2024
9
pileup output both bedMethyl and bedGraph
#204 by Ge0rges was closed Jun 11, 2024
2
Bug in find_motifs bug Something isn't working
#203 by Ge0rges was closed Jun 13, 2024
6
modkit call-mods omits all modification information for many RNA004 reads bug Something isn't working build-available custom build produced for fix.
#202 by pre-mRNA was closed Jun 24, 2024
5
Does pileup always output a value for a covered base? question Further information is requested
#200 by Ge0rges was closed Jun 9, 2024
3
Automated filter threshold set to 1 for pileup and questions about thresholding question Further information is requested troubleshooting workflow and data preparation questions
#198 by kylepalos was closed Jun 6, 2024
4
Error writing results of find-motifs
#197 by SorenHeidelbach was closed Jun 4, 2024
1
CpG Calling with Reference question Further information is requested
#196 by SophieValk was closed Jun 10, 2024
2
Output tsv has some minor code duplication issues in find-motif code part. bug Something isn't working build-available custom build produced for fix.
#195 by bgdga was closed Jun 4, 2024
4
API for modkit extract read_calls_path output? build-available custom build produced for fix. enhancement New feature or request
#194 by billytcl was closed Jun 11, 2024
8
pseudouridylation extracting question Further information is requested
#193 by Papareddy was closed Jun 24, 2024
3
Error! should be at least 1 contig
#189 by james-e-barrett was closed May 27, 2024
3
p values using regions option question Further information is requested
#188 by lucy924 was closed May 28, 2024
3
error: unrecognized subcommand 'find-motifs' (Find highly modified motif sequences) question Further information is requested
#187 by saky7009 was closed Jun 24, 2024
3
Calling 5hmC question Further information is requested
#186 by KevDonn was closed May 23, 2024
4
how to allele-specific methylation calling? question Further information is requested
#185 by sahuno was closed May 22, 2024
2
Does modkit --traditional take into account reverse CpG spots? question Further information is requested
#184 by mvolar was closed May 21, 2024
2
modkit pileup incorrect column name? documentation Improvements or additions to documentation
#182 by josiegleeson was closed May 22, 2024
1
Error during installation question Further information is requested
#180 by molecule53 was closed May 21, 2024
7
Ign.
#176 by Ge0rges was closed May 1, 2024
DMR: processed 0 sites successfully
#175 by Hannah1746 was closed Apr 29, 2024
3
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