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Issues list

[Bug]: Log validation did not catch recent errors with vcell image bug Something isn't working
#59 by bilalshaikh42 was closed Feb 11, 2022 updated Feb 11, 2022
@jonrkarr
3
Update dev deployment of biosimulators along with prod when processing simulator submissions enhancement New feature or request
#60 by bilalshaikh42 was closed Feb 11, 2022 updated Feb 11, 2022
@jonrkarr
2
Setup system for managing access to revising specifications of simulators enhancement New feature or request
#37 by jonrkarr was closed Mar 27, 2021 updated Sep 20, 2021
16 tasks done
@jonrkarr
1
Move results and vega figures into folders? enhancement New feature or request
#44 by bilalshaikh42 was closed Jul 7, 2021 updated Sep 20, 2021
@jonrkarr
2
Unpack example COMBINE/OMEX arhives enhancement New feature or request
#43 by jonrkarr was closed Jul 6, 2021 updated Sep 20, 2021
2 tasks done
@jonrkarr
1
Add metadata about examples following OMEX Metadata guidelines documentation Improvements or additions to documentation example archives
#41 by jonrkarr was closed Jul 22, 2021 updated Sep 20, 2021
20 tasks done
1
@jonrkarr
3
Wrong warning when running the test suite. bug Something isn't working
#54 by danv61 was closed Sep 20, 2021 updated Sep 20, 2021
@jonrkarr
1
Wrong warning when running the test suite. bug Something isn't working
#55 by danv61 was closed Sep 20, 2021 updated Sep 20, 2021
@jonrkarr
1
Add test case to check that data generators for plots are encoded into HDF5 consistently with the BioSimulators guidelines test cases
#42 by jonrkarr was closed Jul 20, 2021 updated Jul 20, 2021
@jonrkarr
1
Enable test for UniformRange once this is fixed in libSED-ML test cases
#25 by jonrkarr was closed Mar 27, 2021 updated Mar 27, 2021
@jonrkarr
1
Debug posting of results to GitHub issues
#36 by jonrkarr was closed Mar 25, 2021 updated Mar 25, 2021
@jonrkarr
1
Remove Ciliberto discrete example bug Something isn't working
#35 by jonrkarr was closed Mar 24, 2021 updated Mar 24, 2021
@jonrkarr
1
Create additional example Vega visualizations
#34 by jonrkarr was closed Mar 6, 2021 updated Mar 6, 2021
3 of 4 tasks
@jonrkarr
1
Check that example logs in documentation are valid documentation Improvements or additions to documentation
#31 by jonrkarr was closed Feb 28, 2021 updated Feb 28, 2021
@jonrkarr
1
Test suite documentation question Further information is requested
#28 by gmarupilla was closed Feb 28, 2021 updated Feb 28, 2021
@jonrkarr
2
Correct relative model references in Villar SBML-core example bug Something isn't working
#14 by jonrkarr was closed Feb 27, 2021 updated Feb 27, 2021
1
@jonrkarr
1
Split Vilar example into separate files for deterministic and discrete simulation example archives
#32 by jonrkarr was closed Feb 27, 2021 updated Feb 27, 2021
@jonrkarr
1
Add additional test cases for validating simulators test cases
#6 by jonrkarr was closed Feb 13, 2021 updated Feb 13, 2021
50 tasks done
@jonrkarr
1
Increase rigor of tests for model changes test cases
#23 by jonrkarr was closed Feb 9, 2021 updated Feb 10, 2021
5 of 6 tasks
@jonrkarr
1
Convert warnings for unsupported features to skips enhancement New feature or request
#18 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Add configuration for whether or not to pull (update) Docker image for simulator enhancement New feature or request
#19 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Incorporate API call to update version of image in UConn cluster enhancement New feature or request
#17 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
8
Improve the details of simulator specification errors enhancement New feature or request
#20 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Once api.biosimulators.org re-deployed, switch GH workflows to use api.biosimulators.org
#13 by jonrkarr was closed Jan 10, 2021 updated Jan 10, 2021
3 tasks done
@jonrkarr
1
Export test results to JSON enhancement New feature or request
#10 by jonrkarr was closed Jan 10, 2021 updated Jan 10, 2021
6 tasks done
@jonrkarr
ProTip! Exclude everything labeled bug with -label:bug.