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Issues list

Make repository private question Further information is requested
#1 by bilalshaikh42 was closed Jul 7, 2020 updated Jul 7, 2020
6
Create deploy branch and change workflow in biosimulators repo to use it
#4 by jonrkarr was closed Dec 23, 2020 updated Dec 23, 2020
2 tasks done
@jonrkarr
1
Delete examples/run.py once existing simulators are passing the test suite
#5 by jonrkarr was closed Dec 31, 2020 updated Dec 31, 2020
@jonrkarr
1
Add example COMBINE/OMEX archives for FBA models enhancement New feature or request
#3 by jonrkarr was closed Jan 1, 2021 updated Jan 1, 2021
@jonrkarr
1
Add test case to check that simulation predictions match the curated dependent dimensions enhancement New feature or request
#11 by jonrkarr was closed Jan 2, 2021 updated Jan 2, 2021
@jonrkarr
1
Add example COMBINE/OMEX archives for logical models enhancement New feature or request
#2 by jonrkarr was closed Jan 10, 2021 updated Jan 10, 2021
@jonrkarr
1
Export test results to JSON enhancement New feature or request
#10 by jonrkarr was closed Jan 10, 2021 updated Jan 10, 2021
6 tasks done
@jonrkarr
Once api.biosimulators.org re-deployed, switch GH workflows to use api.biosimulators.org
#13 by jonrkarr was closed Jan 10, 2021 updated Jan 10, 2021
3 tasks done
@jonrkarr
1
Improve the details of simulator specification errors enhancement New feature or request
#20 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Incorporate API call to update version of image in UConn cluster enhancement New feature or request
#17 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
8
Add configuration for whether or not to pull (update) Docker image for simulator enhancement New feature or request
#19 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Convert warnings for unsupported features to skips enhancement New feature or request
#18 by jonrkarr was closed Jan 31, 2021 updated Jan 31, 2021
@jonrkarr
1
Increase rigor of tests for model changes test cases
#23 by jonrkarr was closed Feb 9, 2021 updated Feb 10, 2021
5 of 6 tasks
@jonrkarr
1
Add additional test cases for validating simulators test cases
#6 by jonrkarr was closed Feb 13, 2021 updated Feb 13, 2021
50 tasks done
@jonrkarr
1
Split Vilar example into separate files for deterministic and discrete simulation example archives
#32 by jonrkarr was closed Feb 27, 2021 updated Feb 27, 2021
@jonrkarr
1
Correct relative model references in Villar SBML-core example bug Something isn't working
#14 by jonrkarr was closed Feb 27, 2021 updated Feb 27, 2021
1
@jonrkarr
1
Test suite documentation question Further information is requested
#28 by gmarupilla was closed Feb 28, 2021 updated Feb 28, 2021
@jonrkarr
2
Check that example logs in documentation are valid documentation Improvements or additions to documentation
#31 by jonrkarr was closed Feb 28, 2021 updated Feb 28, 2021
@jonrkarr
1
Create additional example Vega visualizations
#34 by jonrkarr was closed Mar 6, 2021 updated Mar 6, 2021
3 of 4 tasks
@jonrkarr
1
Remove Ciliberto discrete example bug Something isn't working
#35 by jonrkarr was closed Mar 24, 2021 updated Mar 24, 2021
@jonrkarr
1
Debug posting of results to GitHub issues
#36 by jonrkarr was closed Mar 25, 2021 updated Mar 25, 2021
@jonrkarr
1
Enable test for UniformRange once this is fixed in libSED-ML test cases
#25 by jonrkarr was closed Mar 27, 2021 updated Mar 27, 2021
@jonrkarr
1
Add test case to check that data generators for plots are encoded into HDF5 consistently with the BioSimulators guidelines test cases
#42 by jonrkarr was closed Jul 20, 2021 updated Jul 20, 2021
@jonrkarr
1
Wrong warning when running the test suite. bug Something isn't working
#55 by danv61 was closed Sep 20, 2021 updated Sep 20, 2021
@jonrkarr
1
Wrong warning when running the test suite. bug Something isn't working
#54 by danv61 was closed Sep 20, 2021 updated Sep 20, 2021
@jonrkarr
1
ProTip! no:milestone will show everything without a milestone.