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Issues list

Comparison between modkit and modbam2bed.
#14 opened May 9, 2023 by qiangfu-eu
31
failed to get modbase info for record ..., Skipped: AUX data not found troubleshooting workflow and data preparation questions
#159 opened Apr 10, 2024 by ArnavBharti
22
modkit pileup bed output file has space delimited columns 10-18 and tab delimited 1-9
#43 opened Aug 10, 2023 by nextgenusfs
20
Clarifications on DMR Analysis DMR modkit dmr question Looking for clarification on inputs and/or outputs
#191 opened May 27, 2024 by Proy321
13
Detect methylation data background noise question Looking for clarification on inputs and/or outputs
#147 opened Mar 14, 2024 by Macdot3
13
failed to get modbase info ... skipped: AUX data not found
#134 opened Feb 16, 2024 by vetmohit89
12
Unable to install on Ubuntu 20 (Illegal instruction in VM)
#26 opened Jun 5, 2023 by jcolicchio-soundag
12
Obtain Global methylation level of the genome question Looking for clarification on inputs and/or outputs
#173 opened Apr 25, 2024 by OceaneMion
9
Skipped: AUX data not found for methylation
#131 opened Feb 15, 2024 by vzg100
9
Modkit DMR Pair: Process Killed, No Output
#103 opened Dec 22, 2023 by handoko12u
9
polars script modkit extract question Looking for clarification on inputs and/or outputs
#133 opened Feb 16, 2024 by Macdot3
8
dmr multi still looks for --regions
#90 opened Nov 28, 2023 by Ge0rges
8
bedMethyl file has no motif information question Looking for clarification on inputs and/or outputs
#216 opened Jun 20, 2024 by uuwuyi
7
Are all CpG reported ? question Looking for clarification on inputs and/or outputs
#192 opened May 28, 2024 by OceaneMion
7
Inconsistent results when using call-mods + pileup or pileup directly
#132 opened Feb 16, 2024 by ppapasaikas
7
How to interpret failed reads during modkit extract troubleshooting workflow and data preparation questions
#220 opened Jun 29, 2024 by lkwhite
6
modkit dmr - failed to read tabix index build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#178 opened May 2, 2024 by lilypeck
6
Perform mean of probability for each read position with modkit extract question Looking for clarification on inputs and/or outputs
#163 opened Apr 16, 2024 by OceaneMion
6
modkit extract takes very long enhancement New feature or request extract modkit extract
#119 opened Jan 24, 2024 by pkerbs
6
Is there an easy way to generate % methylation by read position? question Looking for clarification on inputs and/or outputs
#87 opened Nov 22, 2023 by billytcl
6
Segfault on the cliveome
#9 opened May 3, 2023 by mp15
6
Much lower pass rate of 5hmC calls than 5mC calls question Looking for clarification on inputs and/or outputs
#222 opened Jul 2, 2024 by hassebossenbroek
5
Problem interpretating table question Looking for clarification on inputs and/or outputs
#217 opened Jun 21, 2024 by MarioRinBarr
5
How does Modkit handle Large Genome Data? question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#190 opened May 27, 2024 by Yang990-sys
5
Why does the bedgraph output have 5 columns?
#158 opened Apr 10, 2024 by IanCodes
5
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