pileup output both bedMethyl and bedGraph

[Ge0rges]

Hi Arthur,

I was wondering if I pass --bedgraph to modkit pileup can I get both the bedMethyl and the bedGraph out or must I redo the computation?

[ArtRand]

@Ge0rges

I advise people to make a bedGraph from the bedMethyl, it's relatively easy to do with awk or similar - don't re-do the computation.

awk -v OFS="\t" '{print $1, $2, $3, $11, $10}' ${bedmethyl}

[Ge0rges]

Thanks for that.