Output tsv has some minor code duplication issues in find-motif code part.

[bgdga]

Output tsv has some minor code duplication issues in find-motif code part. It's printing same details 2 times, giving out an error with output after printing just 1st row.
Error message geeting at end of run everytime: "> Error! CSV error: found record with 9 fields, but the previous record has 7 fields"
Please fix it soon. Attaching a screenshot of output tsv for example.

[ArtRand]

Hello @bgdga,

Could you show me the command you're using so I can debug the problem?

[bgdga]

Using as- modkit find-motifs -o sample_a.tsv --mod-code a --min-sites 10 --min-coverage 20 --in-bedmethyl sample_AC.bed --ref sample.contigs.fasta

[ArtRand]

Hello @bgdga,

There is a bug in the current release. Please find a build attached with the fix. The branch includes the code change. I will be sure to release a patch this week including this fix. At your convenience please confirm this build does not produce the error.

Just a heads up that setting --min-sites 10 may increase the search time substantially, if you find this to be the case on other samples try using --skip-search.
modkit_dev1c19442_centos7_x86_64.tar.gz

[bgdga]

It's working thankyou.