Skip to content

Issues: nanoporetech/modkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
71 Open 155 Closed
71 Open 155 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Modification summary per BED line enhancement New feature or request
#154 opened Apr 5, 2024 by davidsilvapires
2
Feature request: read from url enhancement New feature or request
#123 opened Jan 31, 2024 by wdecoster
2
High failed calls
#116 opened Jan 19, 2024 by yifengyuan
2
How to construe rna004 model [email protected]_DRACH bedMethyl output?
#109 opened Jan 9, 2024 by kir1to455
2
Modkit BED file impropperly formatted.
#108 opened Jan 5, 2024 by KloostermanJoukje
2
Question about mod_qual value in modkit extract question Looking for clarification on inputs and/or outputs
#95 opened Dec 10, 2023 by liliaevgeniou
2
Difficulties to run modkit with the modbases tutorial question Looking for clarification on inputs and/or outputs
#49 opened Aug 31, 2023 by marceelrf
2
request feature in modkit call-mods enhancement New feature or request
#227 opened Jul 8, 2024 by sathish-t
1
Multi-base entropy enhancement New feature or request
#205 opened Jun 11, 2024 by Ge0rges
1
threshold and motifs enhancement New feature or request question Looking for clarification on inputs and/or outputs
#166 opened Apr 17, 2024 by TiBi-MU
1
Question about CpGs without modification question Looking for clarification on inputs and/or outputs
#164 opened Apr 16, 2024 by VasLem
1
question about how to define the DRACH-motif question Looking for clarification on inputs and/or outputs
#161 opened Apr 11, 2024 by mocherry
1
Parallelization question Looking for clarification on inputs and/or outputs
#150 opened Mar 25, 2024 by martabaragli
1
Multiple testing correction: modkit dmr question Looking for clarification on inputs and/or outputs
#148 opened Mar 14, 2024 by ericmsmall
1
Feature request: Auto bgzip/tabix a pileup
#144 opened Mar 7, 2024 by billytcl
1
Is there a way to run dmr pair with multiple replicates with a region BED file? enhancement New feature or request
#143 opened Mar 7, 2024 by lance0499
1
Issue with coordinates in modkit pileup
#135 opened Feb 19, 2024 by ccastignani
1
IGV visualization of bedMethyl file
#104 opened Dec 24, 2023 by MaestSi
1
pileup does not allow gzipped reference sequence enhancement New feature or request
#100 opened Dec 14, 2023 by KloostermanJoukje 0.2.5
1
Question about afterwork using modkit result & indexing bedMethyl files for igv question Looking for clarification on inputs and/or outputs
#84 opened Nov 17, 2023 by hyunjokoo
1
Different number of line in the bedMethyl table among samples question Looking for clarification on inputs and/or outputs
#77 opened Nov 7, 2023 by HeleneMeMartin
1
ProTip! no:milestone will show everything without a milestone.