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paneaWholeGenomeLandscape2019

rdmorin edited this page Sep 6, 2024 · 41 revisions

title: '' bibliography: 'morinlab.bib'

@paneaWholeGenomeLandscape2019

Summary of novel genes

Entity Tier 1 genes Tier 2 genes Tier 3 genes
BL 2 15 22
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This study, New Tier 1, 2
New Tier 1, BL Tier 1, 2
This study, New Tier 2, 15
New Tier 2, BL Tier 2, 15
This study, New Tier 3, 22
New Tier 3, BL Tier 3, 22
All other BL studies, BL Tier 1, 30
All other BL studies, BL Tier 2, 57
All other BL studies, BL Tier 3, 48
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Novel genes reported in this study

Tier 1

New gene BL tier Average variant quality QC outcome
BMP7 1
HNRNPU 1

Tier 2

New gene BL tier Average variant quality QC outcome
CD83 2 ★ ★ ★ ☆ ☆ PASS
CXCR4 2 ★ ★ ★ ★ ☆ PASS
EIF4A1 2
EPPK1 2
HIST1H3D 2 ★ ★ ★ ☆ ☆ PASS
HIST1H3I 2 ★ ★ ★ ★ ☆ PASS
HIST1H4J 2 ★ ★ ★ ☆ ☆ PASS
IGLL5 2 ★ ★ ★ ★ ☆ PASS
IKZF3 2 ★ ★ ★ ☆ ☆ PASS
IRF8 2 ★ ★ ★ ★ ☆ PASS
MCL1 2 ★ ★ ★ ★ ☆ PASS
PLCG2 2 ★ ★ ★ ☆ ☆ PASS
RNF144B 2 ★ ★ ★ ☆ ☆ PASS
WNK2 2 ★ ★ ★ ★ ☆ PASS
ZFP36L1 2 ★ ★ ★ ★ ☆ PASS

Tier 3

New gene BL tier Average variant quality QC outcome
ALPK2 3 ★ ☆ ☆ ☆ ☆ FAIL
CD79B 3 ★ ★ ☆ ☆ ☆ FAIL
CTCF 3 ★ ☆ ☆ ☆ ☆ FAIL
DNMT1 3 ★ ☆ ☆ ☆ ☆ FAIL
ETS1 3 ★ ☆ ☆ ☆ ☆ FAIL
FZD3 3 ★ ☆ ☆ ☆ ☆ FAIL
HIST1H1C 3 ★ ★ ☆ ☆ ☆ FAIL
HIST1H2AG 3 ★ ★ ☆ ☆ ☆ FAIL
HIST1H2AM 3 ☆ ☆ ☆ ☆ ☆ FAIL
HIST1H2BK 3 ★ ☆ ☆ ☆ ☆ FAIL
HIST1H3H 3 ☆ ☆ ☆ ☆ ☆ FAIL
HIST1H3J 3 ☆ ☆ ☆ ☆ ☆ FAIL
KCNK10 3 ★ ★ ☆ ☆ ☆ FAIL
MME 3 ★ ☆ ☆ ☆ ☆ FAIL
MTOR 3 ★ ☆ ☆ ☆ ☆ FAIL
PABPC4L 3 ★ ★ ☆ ☆ ☆ FAIL
PCDHA11 3 ★ ☆ ☆ ☆ ☆ FAIL
PDZRN3 3 ★ ☆ ☆ ☆ ☆ FAIL
PIK3R1 3 ★ ☆ ☆ ☆ ☆ FAIL
PXDNL 3 ★ ☆ ☆ ☆ ☆ FAIL
SNTB2 3 ★ ★ ☆ ☆ ☆ FAIL
WDR7 3 ★ ★ ☆ ☆ ☆ FAIL

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