Official git repository for Biopython (originally converted from CVS)
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Updated
Aug 23, 2024 - Python
Official git repository for Biopython (originally converted from CVS)
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Versatile open-source tool for microbiome analysis
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Collection of commonly used RDP Tools for easy building
Comparative Genomics Toolkit 3
Sequence-to-graph mapper and graph generator
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
A fast multiple sequence alignment program.
Genome wide orthology inference and dNdS estimation
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Sequence alignment tools
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