a framework for training sequence-level deep learning networks

PANDORA - Predictive Analytics aNd Data Oriented Research Applications 💻

A modular annotation tool for genomic variants

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

RADseq Data Exploration, Manipulation and Visualization using R

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

Phigaro is a scalable command-line tool for predicting phages and prophages

stackr: an R package to run stacks software pipeline

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Shiny app for making and annotating Volcano plots

Genome Contact Map Explorer - gcMapExplorer. Visit:

Build DeepSea training dataset from raw data

genomic alignment similarity search tool

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data

pCMF R package

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)