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structure-alignment

Here are 9 public repositories matching this topic...

biojava / biojava

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

java bioinformatics genomics pdb parser-library protein-data-bank protein-structure protein-sequences sequence-alignment protein-modification structure-alignment structural-bioinformatics

Updated Sep 6, 2024
Java

BGI-SynBio / PyMOL-PUB

Rapid generation of high-quality structure figures for publication with PyMOL-PUB

pymol matplotlib structure-alignment manuscript-figures pymol-extension structure-clustering matplotlib-extension

Updated Oct 30, 2024
Python

shiming-chen / HSVA

Official PyTorch Implementation of HSVA (NeurIPS'21)

structure-alignment domain-adaptation zsl distribution-alignment distribution-adaptation structure-adaptation

Updated Apr 19, 2023
Python

BEAM-Labs / RTM-align

Official code of RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment.

rna-structure structure-alignment

Updated May 28, 2024
C++

RBVI / minrms

A bioinformatics algorithm for generating sequence alignments from 3D structures

bioinformatics protein-structure sequence-alignment structure-alignment structural-bioinformatics

Updated Feb 22, 2022
C++

SNPio

btmartin721 / SNPio

API to read, write, and filter DNA sequence alignment files

snps plots file-converter missing-data filtering principal-component-analysis structure-alignment phylip input-output vcf-files genotypes minor-allele-frequency dna-sequence-alignment

Updated Oct 30, 2024
Python

cspinetta / bio-tp

TP Bioinformatica - UTN FRBA

bioinformatics protein-sequences rna-sequencing structure-alignment

Updated Jun 26, 2017
Scala

nifets / TorusEvol

This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backbones evolve according to a diffusion over the flat square torus.

protein-structure bayesian-inference gibbs-sampling sequence-alignment structure-alignment monte-carlo-sampling

Updated Jun 20, 2023
Julia

BGSU-RNA / RNA-3D-correspondence

Web application for comparing and visualising RNA 3D motifs across many 3D structures

flask structure-alignment rna-motifs

Updated Nov 2, 2024
Python

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