Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Haplotype-aware CNV analysis from single-cell RNA-seq

A minimalist tree plotting library using toyplot graphs

Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

📚 a complete reference book for treeio, tidytree and ggtree packages

A tool for exploring large trees in the browser

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

Interactive assembly and analysis of RAD-seq data sets

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

A fast and scalable phylogenetic tree viewer for microbiome data analysis

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

all methods related to Enterobase

Interface to Open Tree of Life API

Framework for Metastatic And Clonal History INtegrative Analysis

Accurate, resource-frugal and deterministic DNA sequence classifier.

Functions for phylogenetic analyses

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

A phylogeny dating method using least-squares algorithms and criteria