Sequence alignment tools
-
Updated
Aug 7, 2024 - Julia
Sequence alignment tools
Python implementation of Striped Smith-Waterman Algorithm
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
A header-only templated C++17-library for fast and versatile sequence alignment computations.
Global and Local Sequence Alignment
Implement parallel Smith Waterman algorithm on CUDA
Applications that compute pairwise alignments of two biological sequences
implementation and visualizations for sequence alignment algorithms
Web App para alinhamento de sequências de DNA
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
Smith-Waterman alignment implementation
This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.
Implementation of Smith-Waterman local alignment model- find closest local alignments in two given amino acid sequences. BLOSUM was used as the scoring matrix.
Smith Waterman algorithm Java implementation
AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
R package for global alignment between two genomic sequences
🧬🔍 Smith-Waterman pairwise sequences alignment ✍️🔡
Add a description, image, and links to the smith-waterman-alignment topic page so that developers can more easily learn about it.
To associate your repository with the smith-waterman-alignment topic, visit your repo's landing page and select "manage topics."