tools for working with genome variation graphs
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Updated
Aug 22, 2024 - C++
tools for working with genome variation graphs
Sequence-to-graph mapper and graph generator
Tools for manipulating sequence graphs in the GFA and rGFA formats
De novo genome assembly and multisample variant calling
Genome inference from a population reference graph
Modular Multi-scale Integrated Genome Graph Browser
A modern genomics framework for julia
visual analysis of your VCF files
Toolkit for VNTR genotyping and repeat-pan genome graph construction
Linear-time, low-memory construction of variation graphs
Sparse Binary Relation Representations for Genome Graph Annotation
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
This is experiment to measure performance in vg recalibrate, testing different models.
A tool for modelling graphs of genetic variation.
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