An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Versatile open-source tool for microbiome analysis

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

FastQC port to Qt5: A quality control tool for high throughput sequence data.

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

Fast and accurate sequence demultiplexing

DuckDB Extension for reading and writing FASTA and FASTQ Files

Fastq compression

Lightweight C++ library for reading FASTA and FASTQ files.

BioC++ Input/Output library

Extract sequences from a fastx file given a subsequence or identifier

C++ code to evaluate basic stats for a fasta/fastq(.gz) file

HUMID: reference free FastQ deduplication

reference-free base quality score recalibration

A tool to index and extract data from gzipped FASTQ files

Software for cleaning fastq reads with or without adapter list

convert fastq to fasta very fast!

Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.

Vim-like program for viewing genetic sequences on the command line (ncurses).