🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

less like viewer for fastq files

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming contigs and converting FASTQ to FASTA. Written in Bash. All in one place.

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

血小板转录组fastq数据处理

An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me

fqtk: A toolkit to perform common tasks on FASTQ reads. Rename FASTQ identifiers, print FASTQ statistics and convert FASTQ to FASTA. This program is written in AWK and Bash.

metagenome simulation for targeted and reduced-representation sequencing

simple and convenient program to convert fasta sequences to fastq sequences

Interleaves separated pair-ended FASTQ files

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.

🔬 A replication of ChiP-Seq analysis from an experiment regarding gene induction and repression during terminal erythropoiesis that are mediated by distinct epigenetic changes

This Roddy plugin contains a basic bam to fastq workflow using Picard and Samtools.

A GUI tool to download SRA files

Bash script to download fastq files from the SRA, with priority to european servers