Randomly subsample sequencing reads or alignments

Grep for FASTQ files

Command line utility for manipulating Illumina-generated FASTQ files.

FASTA and FASTQ parsing in Rust

A quality control tool for FASTQ files written in rust

Remove human reads from a sequencing run

A FASTA/FASTQ format parser library

Extract subsets of ONT (Nanopore) reads based on time

mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.

Simple demultiplexing of FASTQ, one oligo (barcode) at a time

Simple fastq read and base counter in Rust

a fastx parser for generating sequence length metrics

a collection of CLI utilities for processing fasta/fastq (FASTX) files.

work with the time stamps of Oxford Nanopore (ONT) fastq files

Ultrafast to get statistics from fasta and fastq files

Find FTP urls for FASTQ on ENA

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

A tight DNA sequencing quality analyser written in Rust from scratch. Provide raw DNA sequencing run .fastq files and visualise the quality plots of all of the reads in record time.

A library to read, manipulate and write various genetic sequencing formats.