FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
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Updated
Nov 21, 2023 - Python
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
TAXnomic Profile Aggregation and STAndardisation
Accurate, resource-frugal and deterministic DNA sequence classifier.
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
🐴 CLinically Okay Metagenomic Pipeline 🐴
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
subset and spaced seed design tool
discover-virome: identify and quantify viruses from metagenomic assemblies
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
A selection of databases for Genestrip
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
XGBoost implementation for bacteria family identification
Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset
The impact of transitive annotation on the training of taxonomic classifiers
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