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PE read names in pseudobam #206

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goranrakocevic opened this issue Apr 10, 2019 · 0 comments
Open

PE read names in pseudobam #206

goranrakocevic opened this issue Apr 10, 2019 · 0 comments

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@goranrakocevic
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Hi,

Would it be possible to have Kallisto strip off '/1' and '/2' from paired-end read names when producing the pseudobam? Aligners will typlically do that, as many downstream tools rely on paired ends having identical names.
Thanks!
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