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Issues list

DMR without pileup question Looking for clarification on inputs and/or outputs
#183 opened May 16, 2024 by ArnavBharti
4
What is exactly mod_qual? question Looking for clarification on inputs and/or outputs
#181 opened May 12, 2024 by OceaneMion
3
num-reads not working troubleshooting workflow and data preparation questions
#179 opened May 5, 2024 by ShokodkoMariia
3
modkit dmr - failed to read tabix index build-available custom build produced for fix. troubleshooting workflow and data preparation questions
#178 opened May 2, 2024 by lilypeck
6
Validation with ground truth
#177 opened May 1, 2024 by vyx-lucy-kaplun
2
Perform DMR analysis on the same file question Looking for clarification on inputs and/or outputs
#174 opened Apr 26, 2024 by OceaneMion
3
How to detect the background noise from control and test samples question Looking for clarification on inputs and/or outputs
#172 opened Apr 24, 2024 by xiangpingyu
2
threshold and motifs enhancement New feature or request question Looking for clarification on inputs and/or outputs
#166 opened Apr 17, 2024 by TiBi-MU
1
Question about CpGs without modification question Looking for clarification on inputs and/or outputs
#164 opened Apr 16, 2024 by VasLem
1
Perform mean of probability for each read position with modkit extract question Looking for clarification on inputs and/or outputs
#163 opened Apr 16, 2024 by OceaneMion
6
question about how to define the DRACH-motif question Looking for clarification on inputs and/or outputs
#161 opened Apr 11, 2024 by mocherry
1
failed to get modbase info for record ..., Skipped: AUX data not found troubleshooting workflow and data preparation questions
#159 opened Apr 10, 2024 by ArnavBharti
22
Modification summary per BED line enhancement New feature or request
#154 opened Apr 5, 2024 by davidsilvapires
2
bed file resulting from pileup and igv
#153 opened Apr 5, 2024 by mocherry
3
Parallelization question Looking for clarification on inputs and/or outputs
#150 opened Mar 25, 2024 by martabaragli
1
Multiple testing correction: modkit dmr question Looking for clarification on inputs and/or outputs
#148 opened Mar 14, 2024 by ericmsmall
1
Detect methylation data background noise question Looking for clarification on inputs and/or outputs
#147 opened Mar 14, 2024 by Macdot3
13
Feature request: Auto bgzip/tabix a pileup
#144 opened Mar 7, 2024 by billytcl
1
Is there a way to run dmr pair with multiple replicates with a region BED file? enhancement New feature or request
#143 opened Mar 7, 2024 by lance0499
1
Issue with coordinates in modkit pileup
#135 opened Feb 19, 2024 by ccastignani
1
failed to get modbase info ... skipped: AUX data not found
#134 opened Feb 16, 2024 by vetmohit89
12
polars script modkit extract question Looking for clarification on inputs and/or outputs
#133 opened Feb 16, 2024 by Macdot3
8
Inconsistent results when using call-mods + pileup or pileup directly
#132 opened Feb 16, 2024 by ppapasaikas
7
Skipped: AUX data not found for methylation
#131 opened Feb 15, 2024 by vzg100
9
MN tag length and seq length don't match for 99.9% of reads
#128 opened Feb 14, 2024 by ddubocan
3
ProTip! no:milestone will show everything without a milestone.