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Add a SONAME to shared libraries #524

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merged 2 commits into from
May 21, 2020
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tamiko
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@tamiko tamiko commented Apr 30, 2020

Ginkgo is written in C++ and does not guarantee any stable ABI.
Consequently, all shared libraries should be annotated by an appropriate
SONAME (this patch simply uses the release version). This ensures
conformity with best practices and library requirements for popular
Linux distributions (e.g., Debian/Ubuntu). It also prevents silent
breakage (at dynamic link time / run time) when the library ABI changed
and user code should have been recompiled.

@pratikvn pratikvn added the reg:build This is related to the build system. label May 4, 2020
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pratikvn commented May 4, 2020

@tamiko . Thank you for your contribution!

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LGTM! Can you please add yourself to the contributors list as well ?

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LGTM! Thanks for your contribution.

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Thanks for your contribution! For my understanding: When linking an executable with a library that provides a versioned SONAME, will CMake then correctly set the NEEDED entry to include the version number?

@tcojean tcojean added the 1:ST:ready-for-review This PR is ready for review label May 4, 2020
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tamiko commented May 4, 2020

@pratikvn
Added an entry to the contributors file.

@upsj

When linking an executable with a library that provides a versioned SONAME, will CMake then correctly set the NEEDED entry to include the version number?

Yes. By providing above target property CMake will create the shared library with a SONAME and set up appropriate symlinks:

% objdump -x libginkgo.so | grep SONAME
  SONAME               libginkgo.so.1.1.1
% ls -la libginkgo.so*
lrwxrwxrwx 1 root root      18 Apr 30 16:23 libginkgo.so -> libginkgo.so.1.1.1
-rwxr-xr-x 1 root root 7678896 Apr 30 16:23 libginkgo.so.1.1.1

The linker will now record libginkgo.so.1.1.1 in the dynamic section of executables and libraries linking against libginkgo.so:

% objdump -x libdeal_II.so | grep libginkgo.so
  NEEDED               libginkgo.so.1.1.1

The dynamic linker/loader will now search for a shared object file named libginkgo.so.1.1.1 instead of libginkgo.so:

% ldd libdeal_II.so | grep libginkgo.so
libginkgo.so.1.1.1 => /usr/lib64/libginkgo.so.1.1.1 (0x00007f4f59a4f000)

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upsj commented May 4, 2020

We seem to have some issues with the interaction of HIP and nvcc as a linker.
CI Pipeline

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tcojean commented May 4, 2020

Yes I saw that, I'm looking into it.

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LGTM!

@tcojean tcojean added this to the Ginkgo 1.2.0 milestone May 14, 2020
tcojean added a commit that referenced this pull request May 19, 2020
Improves the compilation speed of our CI system by using the ninja build system.

+ Also generate a new AMD container with updated compilers.
+ Fix the issue found in #524 by linking with g++ 
   instead of nvcc with HIP.

Related PR: #533
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tcojean commented May 19, 2020

@tamiko Sorry for the delay, could you rebase this to the latest develop status? The HIP issue which this PR highlighted should now be fixed.

Ginkgo is written in C++ and does not guarantee any stable ABI.
Consequently, all shared libraries should be annotated by an appropriate
SONAME (this patch simply uses the release version). This ensures
conformity with best practices and library requirements for popular
Linux distributions (e.g., Debian/Ubuntu). It also prevents silent
breakage (at dynamic link time / run time) when the library ABI changed
and user code should have been recompiled.
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tamiko commented May 20, 2020

@tcojean I rebased onto the current develop branch.

@upsj upsj added 1:ST:ready-to-merge This PR is ready to merge. and removed 1:ST:ready-for-review This PR is ready for review labels May 20, 2020
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sonarcloud bot commented May 21, 2020

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities (and Security Hotspot 0 Security Hotspots to review)
Code Smell A 0 Code Smells

No Coverage information No Coverage information
No Duplication information No Duplication information

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codecov bot commented May 21, 2020

Codecov Report

Merging #524 into develop will decrease coverage by 0.11%.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #524      +/-   ##
===========================================
- Coverage    88.71%   88.59%   -0.12%     
===========================================
  Files          276      276              
  Lines        17761    17724      -37     
===========================================
- Hits         15756    15703      -53     
- Misses        2005     2021      +16     
Impacted Files Coverage Δ
omp/components/format_conversion.hpp 40.00% <0.00%> (-60.00%) ⬇️
include/ginkgo/core/matrix/hybrid.hpp 73.83% <0.00%> (-10.38%) ⬇️
include/ginkgo/core/matrix/sellp.hpp 81.81% <0.00%> (-8.43%) ⬇️
include/ginkgo/core/base/composition.hpp 89.28% <0.00%> (-3.31%) ⬇️
include/ginkgo/core/base/name_demangling.hpp 85.71% <0.00%> (-3.18%) ⬇️
include/ginkgo/core/base/math.hpp 94.11% <0.00%> (-2.86%) ⬇️
core/base/extended_float.hpp 92.30% <0.00%> (-1.10%) ⬇️
include/ginkgo/core/matrix/dense.hpp 97.70% <0.00%> (+2.29%) ⬆️
include/ginkgo/core/base/polymorphic_object.hpp 96.82% <0.00%> (+2.84%) ⬆️

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@upsj upsj merged commit f04da13 into ginkgo-project:develop May 21, 2020
@tcojean tcojean mentioned this pull request Jun 23, 2020
tcojean added a commit that referenced this pull request Jul 7, 2020
The Ginkgo team is proud to announce the new minor release of Ginkgo version
1.2.0. This release brings full HIP support to Ginkgo, new preconditioners
(ParILUT, ISAI), conversion between double and float for all LinOps, and many
more features and fixes.

Supported systems and requirements:
+ For all platforms, cmake 3.9+
+ Linux and MacOS
  + gcc: 5.3+, 6.3+, 7.3+, all versions after 8.1+
  + clang: 3.9+
  + Intel compiler: 2017+
  + Apple LLVM: 8.0+
  + CUDA module: CUDA 9.0+
  + HIP module: ROCm 2.8+
+ Windows
  + MinGW and CygWin: gcc 5.3+, 6.3+, 7.3+, all versions after 8.1+
  + Microsoft Visual Studio: VS 2017 15.7+
  + CUDA module: CUDA 9.0+, Microsoft Visual Studio
  + OpenMP module: MinGW or CygWin.


The current known issues can be found in the [known issues page](https://github.com/ginkgo-project/ginkgo/wiki/Known-Issues).


# Additions
Here are the main additions to the Ginkgo library. Other thematic additions are listed below.
+ Add full HIP support to Ginkgo [#344](#344), [#357](#357), [#384](#384), [#373](#373), [#391](#391), [#396](#396), [#395](#395), [#393](#393), [#404](#404), [#439](#439), [#443](#443), [#567](#567)
+ Add a new ISAI preconditioner [#489](#489), [#502](#502), [#512](#512), [#508](#508), [#520](#520)
+ Add support for ParILUT and ParICT factorization with ILU preconditioners [#400](#400)
+ Add a new BiCG solver [#438](#438)
+ Add a new permutation matrix format [#352](#352), [#469](#469)
+ Add CSR SpGEMM support [#386](#386), [#398](#398), [#418](#418), [#457](#457)
+ Add CSR SpGEAM support [#556](#556)
+ Make all solvers and preconditioners transposable [#535](#535)
+ Add CsrBuilder and CooBuilder for intrusive access to matrix arrays [#437](#437)
+ Add a standard-compliant allocator based on the Executors [#504](#504)
+ Support conversions for all LinOp between double and float [#521](#521)
+ Add a new boolean to the CUDA and HIP executors to control DeviceReset (default off) [#557](#557)
+ Add a relaxation factor to IR to represent Richardson Relaxation [#574](#574)
+ Add two new stopping criteria, for relative (to `norm(b)`) and absolute residual norm [#577](#577)

### Example additions
+ Templatize all examples to simplify changing the precision [#513](#513)
+ Add a new adaptive precision block-Jacobi example [#507](#507)
+ Add a new IR example [#522](#522)
+ Add a new Mixed Precision Iterative Refinement example [#525](#525)
+ Add a new example on iterative trisolves in ILU preconditioning [#526](#526), [#536](#536), [#550](#550)

### Compilation and library changes
+ Auto-detect compilation settings based on environment [#435](#435), [#537](#537)
+ Add SONAME to shared libraries [#524](#524)
+ Add clang-cuda support [#543](#543)

### Other additions
+ Add sorting, searching and merging kernels for GPUs [#403](#403), [#428](#428), [#417](#417), [#455](#455)
+ Add `gko::as` support for smart pointers [#493](#493)
+ Add setters and getters for criterion factories [#527](#527)
+ Add a new method to check whether a solver uses `x` as an initial guess [#531](#531)
+ Add contribution guidelines [#549](#549)

# Fixes
### Algorithms
+ Improve the classical CSR strategy's performance [#401](#401)
+ Improve the CSR automatical strategy [#407](#407), [#559](#559)
+ Memory, speed improvements to the ELL kernel [#411](#411)
+ Multiple improvements and fixes to ParILU [#419](#419), [#427](#427), [#429](#429), [#456](#456), [#544](#544)
+ Fix multiple issues with GMRES [#481](#481), [#523](#523), [#575](#575)
+ Optimize OpenMP matrix conversions [#505](#505)
+ Ensure the linearity of the ILU preconditioner [#506](#506)
+ Fix IR's use of the advanced apply [#522](#522)
+ Fix empty matrices conversions and add tests [#560](#560)

### Other core functionalities
+ Fix complex number support in our math header [#410](#410)
+ Fix CUDA compatibility of the main ginkgo header [#450](#450)
+ Fix isfinite issues [#465](#465)
+ Fix the Array::view memory leak and the array/view copy/move [#485](#485)
+ Fix typos preventing use of some interface functions [#496](#496)
+ Fix the `gko::dim` to abide to the C++ standard [#498](#498)
+ Simplify the executor copy interface [#516](#516)
+ Optimize intermediate storage for Composition [#540](#540)
+ Provide an initial guess for relevant Compositions [#561](#561)
+ Better management of nullptr as criterion [#562](#562)
+ Fix the norm calculations for complex support [#564](#564)

### CUDA and HIP specific
+ Use the return value of the atomic operations in our wrappers [#405](#405)
+ Improve the portability of warp lane masks [#422](#422)
+ Extract thread ID computation into a separate function [#464](#464)
+ Reorder kernel parameters for consistency [#474](#474)
+ Fix the use of `pragma unroll` in HIP [#492](#492)

### Other
+ Fix the Ginkgo CMake installation files [#414](#414), [#553](#553)
+ Fix the Windows compilation [#415](#415)
+ Always use demangled types in error messages [#434](#434), [#486](#486)
+ Add CUDA header dependency to appropriate tests [#452](#452)
+ Fix several sonarqube or compilation warnings [#453](#453), [#463](#463), [#532](#532), [#569](#569)
+ Add shuffle tests [#460](#460)
+ Fix MSVC C2398 error [#490](#490)
+ Fix missing interface tests in test install [#558](#558)

# Tools and ecosystem
### Benchmarks
+ Add better norm support in the benchmarks [#377](#377)
+ Add CUDA 10.1 generic SpMV support in benchmarks [#468](#468), [#473](#473)
+ Add sparse library ILU in benchmarks [#487](#487)
+ Add overhead benchmarking capacities [#501](#501)
+ Allow benchmarking from a matrix list file [#503](#503)
+ Fix benchmarking issue with JSON and non-finite numbers [#514](#514)
+ Fix benchmark logger crashers with OpenMP [#565](#565)

### CI related
+ Improvements to the CI setup with HIP compilation [#421](#421), [#466](#466)
+ Add MacOSX CI support [#470](#470), [#488](#488)
+ Add Windows CI support [#471](#471), [#488](#488), [#510](#510), [#566](#566)
+ Use sanitizers instead of valgrind [#476](#476)
+ Add automatic container generation and update facilities [#499](#499)
+ Fix the CI parallelism settings [#517](#517), [#538](#538), [#539](#539)
+ Make the codecov patch check informational [#519](#519)
+ Add support for LLVM sanitizers with improved thread sanitizer support [#578](#578)

### Test suite
+ Add an assertion for sparsity pattern equality [#416](#416)
+ Add core and reference multiprecision tests support [#448](#448)
+ Speed up GPU tests by avoiding device reset [#467](#467)
+ Change test matrix location string [#494](#494)

### Other
+ Add Ginkgo badges from our tools [#413](#413)
+ Update the `create_new_algorithm.sh` script [#420](#420)
+ Bump copyright and improve license management [#436](#436), [#433](#433)
+ Set clang-format minimum requirement [#441](#441), [#484](#484)
+ Update git-cmake-format [#446](#446), [#484](#484)
+ Disable the development tools by default [#442](#442)
+ Add a script for automatic header formatting [#447](#447)
+ Add GDB pretty printer for `gko::Array` [#509](#509)
+ Improve compilation speed [#533](#533)
+ Add editorconfig support [#546](#546)
+ Add a compile-time check for header self-sufficiency [#552](#552)


# Related PR: #583
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