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Issues list

SGD IBA influx at source causes false positive(?) in sanity checks bug (B: affects usability)
#2371 opened Oct 7, 2024 by kltm
@kltm
4
Promote EcoCyc to top-level resource for the purposes of the GO pipeline bug (C: surface issue)
#2357 opened Aug 15, 2024 by kltm
Clean out remaining old goa references (e.g. rna, complex) now that we've switched to goa "plus" files bug (B: affects usability)
#2341 opened Jul 5, 2024 by kltm
@kltm
1
Create end-user GAF validation SOP / tooling enhancement
#2303 opened Apr 26, 2024 by kltm
@kltm
1
Make (and use) isoform promotion GORULE enhancement
#2287 opened Apr 4, 2024 by kltm
@dustine32 @sierra-moxon @pgaudet
5
Merge in metadata changes necessary for using our new (internal) MGI upstreams enhancement
#2285 opened Apr 4, 2024 by kltm
@sierra-moxon
1
Change the name of goa_* files in annotations/ to clarify derived status bug (C: surface issue)
#2271 opened Mar 25, 2024 by kltm
5 tasks
@kltm
1
Update GeneDB metadata to VEuPathDB metadata enhancement
#2256 opened Mar 11, 2024 by kltm
@kltm
2
GO procedure for if/when OMIM CURIE/identifier changes to "MIM" bug (C: surface issue)
#2238 opened Feb 14, 2024 by kltm
10
On GO annotations download page, links to HTTP resources can cause browser issues bug (B: affects usability)
#2154 opened Oct 30, 2023 by kltm
7
Implement GPAD/GPI cross check so that bad identifiers are eliminated early and do not make it to output bug (A: showstopper)
#2066 opened Sep 12, 2023 by kltm
@dustine32 @mugitty
12
Create a GO-CAM -> TSV file for end user consumption
#2008 opened May 18, 2023 by kltm
1 task
@balhoff
10
Make sure that species name and abbreviation information comes from a single metadata source enhancement
#2001 opened Apr 15, 2023 by kltm
1
List (and deal with) external links (GO-provided widgets or public interfaces) and traffic come into the Noctua curation system
#1928 opened Nov 17, 2022 by kltm
2 tasks
@kltm
1
We should standardize on a single email address for documentation bug (C: surface issue) documentation
#1877 opened Jul 6, 2022 by kltm
@suzialeksander
2
Examine traffic (from the Alliance / AGR?) coming through the GO API
#1872 opened Jul 2, 2022 by kltm
3
AWS Lambda dropping support for python 3.6; catalog use of python 3.6 in GO lambda functions question
#1834 opened Apr 15, 2022 by kltm
8
Make sure that all public resources are served from a *.geneontology.org domain bug (B: affects usability)
#1800 opened Feb 23, 2022 by kltm
6 tasks
Update user-facing software and documentation to have correct copyright dates bug (C: surface issue)
#1761 opened Jan 7, 2022 by kltm
3 of 5 tasks
10
Filtered goa_uniprot_all_noiea.gaf file does not contain any kind of header; add "edited" header comment to goa_uniprot_all.gaf bug (C: surface issue)
#1753 opened Nov 2, 2021 by kltm
2
Perform test to see if COVID-19 data from the COVID-19 Disease Map group is easily imported enhancement
#1696 opened May 27, 2021 by kltm
Switch go-site repo from travis to github actions bug (A: showstopper)
#1590 opened Dec 2, 2020 by kltm
1
Harmonize SynGO's use of UniProt identifiers and MOD identifiers bug (B: affects usability)
#1568 opened Oct 28, 2020 by kltm
@pgaudet
2
common_name in go-reference-species.yaml is not unique? bug (C: surface issue) question
#1564 opened Oct 21, 2020 by kltm
@dustine32
10
Clarify the ability for basic pipeline tooling to parse and produce UTF-8 in files question
#1514 opened Jun 11, 2020 by kltm
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