You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In the release pipeline, the filtered noiea product of the goa_uniprot_all.gaf does not have a header. Minimally, it should have !gaf-version: 2.2; ideally, the usual pass-through notice (although that's handled by ontobio which we do not use here).
My guess is that the filter script is literally line matching based on species. I suspect adding a comment pass-through for the filter would fix this. As well, literally doing something like echo, cat, rm, and mv.
I'd also note that this would go away naturally with the species reorientation.
Also, from @cmungall : add a comment to goa_uniprot_all that we are filtering the "canonical species" list and that this has been processed from the upstream.
kltm
changed the title
Filtered goa_uniprot_all_noiea.gaf file does not contain any kind of header
Filtered goa_uniprot_all_noiea.gaf file does not contain any kind of header; add "edited" header comment to goa_uniprot_all.gaf
Mar 1, 2023
In the release pipeline, the filtered noiea product of the goa_uniprot_all.gaf does not have a header. Minimally, it should have
!gaf-version: 2.2
; ideally, the usual pass-through notice (although that's handled by ontobio which we do not use here).My guess is that the filter script is literally line matching based on species. I suspect adding a comment pass-through for the filter would fix this. As well, literally doing something like
echo
,cat
,rm
, andmv
.I'd also note that this would go away naturally with the species reorientation.
From geneontology/helpdesk#361
The text was updated successfully, but these errors were encountered: