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128 Open 803 Closed
128 Open 803 Closed
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Issues list

Add additional normalisation method?
#1155 opened Aug 30, 2022 by connorrogerson
computeMatrix with errors Mean of empty slice
#1154 opened Aug 10, 2022 by Suger0917
Problem with the HeatMap - it is empty
#1153 opened Aug 8, 2022 by mvukk
3
--lineAtTickMarks #924 query
#1152 opened Aug 8, 2022 by Adnanhashim
Normalized using --perGroup with the plotProfile tool
#1151 opened Jul 23, 2022 by aaperez9201
4 tasks
Isolating Clusters From Heatmap Created With DeepTools
#1149 opened Jul 19, 2022 by kherzberger
2
Add "auto" option to --yMin and --yMax of plotHeatmap feature
#1148 opened Jul 17, 2022 by dariober
1
alignmentsieve output bamfile
#1147 opened Jul 7, 2022 by Rickyzhang1990
HeatMap empty
#1145 opened Jul 6, 2022 by mvukk
1
bamCoverage bin size is variable within a file and between files
#1144 opened Jun 16, 2022 by mheskett
4
Different results using bamCoverage with or without samFlagExclude
#1143 opened Jun 1, 2022 by VirginieJJ
Feature request! Add --numPlotsPerRow to plotHeatmap
#1142 opened May 29, 2022 by sarjopp
can plotProfile --clusterUsingSamples do multiple clusters?
#1141 opened May 26, 2022 by sarjopp
computeMatrix fails with whole chromosome bed (similar to #1114)
#1140 opened May 26, 2022 by sarjopp
deeptools bam and bigwig peak not the same
#1139 opened May 23, 2022 by DawnEve
4 tasks done
1
enahncement of multibamsummary performance enhancement
#1138 opened May 6, 2022 by LeilyR
1
heatmap - name and position of gene of itnerest
#1133 opened Mar 29, 2022 by mvukk
1
AttributeError: 'module' object has no attribute 'to_hex'（deeptools v2.3.2）
#1131 opened Mar 24, 2022 by Golden-proteogenomics
1
bamCompare --skipZeroOverZero bugged
#1130 opened Mar 22, 2022 by joshscurll
computeGCBias - UnboundLocalError: local variable 'index' referenced before assignment
#1129 opened Mar 7, 2022 by Simso86
different sizes of .fasta files inputs changes output
#1126 opened Feb 28, 2022 by rotemavr
1
Possible to calculate AUC and/or statistics for computeMatrix/plotProfile results?
#1123 opened Feb 24, 2022 by bhanratt
2
keeping track of chr:start-end of bins when using multiBamSummary in bin mode
#1120 opened Feb 12, 2022 by castaway1990
1
Can I draw a whole-genome chromatin metaplot with Deeptools?
#1119 opened Feb 8, 2022 by TheAbsy
1
bamCoverage taking four nucleotides instead of three when --MNase is used
#1118 opened Jan 27, 2022 by feraltp
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