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Thanks for your wonderful tool.
I used deeptools 3.5.1 and Python 3.9.12.
When I was running computeMatrix for ATAC-seq peaks using code:
computeMatrix reference-point
-S ESC_ATAC.bw
-R mm10_genecodeVM23.bed
--referencePoint TSS
-a 1000 -b 1000
-out matrix_Genes_ES_bulk.tab.gz
--outFileSortedRegions ES_bulk_region_order.bed
I got errors with thousands Skipping lines:
Skipping ENSMUST00000178569.1, due to being absent in the computeMatrix output.
/software/miniconda3/lib/python3.9/site-packages/deeptools/heatmapper.py:1219: RuntimeWarning:
Mean of empty slice
After that, results of plotHeatmap was empty.
Could you please give me some advice?
Thank you so much!
The text was updated successfully, but these errors were encountered:
Dear deepTools group,
Thanks for your wonderful tool.
I used deeptools 3.5.1 and Python 3.9.12.
When I was running computeMatrix for ATAC-seq peaks using code:
computeMatrix reference-point
-S ESC_ATAC.bw
-R mm10_genecodeVM23.bed
--referencePoint TSS
-a 1000 -b 1000
-out matrix_Genes_ES_bulk.tab.gz
--outFileSortedRegions ES_bulk_region_order.bed
I got errors with thousands Skipping lines:
Skipping ENSMUST00000178569.1, due to being absent in the computeMatrix output.
/software/miniconda3/lib/python3.9/site-packages/deeptools/heatmapper.py:1219: RuntimeWarning:
Mean of empty slice
After that, results of plotHeatmap was empty.
Could you please give me some advice?
Thank you so much!
The text was updated successfully, but these errors were encountered: