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Can I draw a whole-genome chromatin metaplot with Deeptools? #1119

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TheAbsy opened this issue Feb 8, 2022 · 1 comment
Open

Can I draw a whole-genome chromatin metaplot with Deeptools? #1119

TheAbsy opened this issue Feb 8, 2022 · 1 comment

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@TheAbsy
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TheAbsy commented Feb 8, 2022

Hello!
I want to know the method of drawing metaplot like this,the width of each box correlates with the chromosome length.
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Thank you

@dpryan79
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dpryan79 commented Feb 9, 2022

You could in theory do that, by making a BED file with 1 entry for each chromosome. However the boxes won't be scaled to the length of the chromosome, since that makes direct comparison more difficult (you could leave X kb on each end unscaled, though, depending on what you want to show).

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