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The deepTools ecosystem

deepTools and related packages

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  1. pyGenomeTracks pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    Python 735 112

  2. deepTools deepTools Public

    Tools to process and analyze deep sequencing data.

    Python 662 205

  3. HiCExplorer HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 221 68

  4. pyBigWig pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    C 206 47

  5. HiCBrowser HiCBrowser Public

    Simple web browser to visualize HiC tracks

    JavaScript 18 5

  6. py2bit py2bit Public

    A python library for accessing 2bit files

    C 15 8

Repositories

Showing 10 of 13 repositories
  • HiCExplorer Public

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    deeptools/HiCExplorer’s past year of commit activity
    Python 221 GPL-3.0 68 119 (1 issue needs help) 0 Updated Jun 28, 2024
  • pyBigWig Public

    A python extension for quick access to bigWig and bigBed files

    deeptools/pyBigWig’s past year of commit activity
    C 206 MIT 47 11 0 Updated Jun 19, 2024
  • pyGenomeTracks Public

    python module to plot beautiful and highly customizable genome browser tracks

    deeptools/pyGenomeTracks’s past year of commit activity
    Python 735 GPL-3.0 112 24 4 Updated Jun 10, 2024
  • HiCMatrix Public
    deeptools/HiCMatrix’s past year of commit activity
    Python 11 GPL-3.0 8 0 0 Updated Apr 30, 2024
  • deepTools Public

    Tools to process and analyze deep sequencing data.

    deeptools/deepTools’s past year of commit activity
    Python 662 205 124 6 Updated Apr 8, 2024
  • github-actions Public

    Play around with github actions

    deeptools/github-actions’s past year of commit activity
    JavaScript 0 MIT 1 0 12 Updated Aug 16, 2023
  • py2bit Public

    A python library for accessing 2bit files

    deeptools/py2bit’s past year of commit activity
    C 15 MIT 8 1 0 Updated Jul 29, 2022
  • Knight-Ruiz-Matrix-balancing-algorithm Public
    deeptools/Knight-Ruiz-Matrix-balancing-algorithm’s past year of commit activity
    C++ 9 4 5 1 Updated Apr 13, 2021
  • HiCBrowser Public

    Simple web browser to visualize HiC tracks

    deeptools/HiCBrowser’s past year of commit activity
    JavaScript 18 GPL-2.0 5 6 2 Updated Dec 12, 2019
  • hicBuildMatrixCpp Public

    C++ implementation of hicBuildMatrix

    deeptools/hicBuildMatrixCpp’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Oct 16, 2019
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