Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

matrix minor bugfixes #1049

Merged
merged 1 commit into from
Jul 31, 2023
Merged

Conversation

mickaelaccensi
Copy link
Collaborator

@mickaelaccensi mickaelaccensi commented Jul 28, 2023

Pull Request Summary

minor bugfixes for matrix grepping on keywords

Description

Commit Message

minor bugfixes for matrix grepping on keywords

Check list

Testing

  • How were these changes tested?
  • Are the changes covered by regression tests? (If not, why? Do new tests need to be added?)
  • Have the matrix regression tests been run (if yes, please note HPC and compiler)?
  • Please indicate the expected changes in the regression test output, (Note the list of known non-identical tests.)
  • Please provide the summary output of matrix.comp (matrix.Diff.txt, matrixCompFull.txt and matrixCompSummary.txt):

@MatthewMasarik-NOAA
Copy link
Collaborator

@mickaelaccensi thank you for these bug fixes! I'll start the regtests.

@ukmo-ccbunney
Copy link
Collaborator

Hi @mickaelaccensi.

I wonder if we could add another small bugfix for matrix,comp to your PR?

I notice the the ufs regtests always run, even when not selected.

This is happening because the following lines in matrix.base are not contained in an if block:

WW3/regtests/bin/matrix.base

Lines 2152 to 2159 in 02cb72f

# Global unstr case
# Domain Decomposition Explicit
fi
echo "$rtst -s MPI -s PDLIB -i input_unstr -w work_unstr_a -g a -f -p $mpi -n $np $ww3 ww3_ufs1.1" >> matrix.body
# Domain Decomposition Block Explicit
echo "$rtst -s MPI -s PDLIB -i input_unstr -w work_unstr_b -g b -f -p $mpi -n $np $ww3 ww3_ufs1.1" >> matrix.body
# Domain Decomposition Implicit
echo "$rtst -s MPI -s PDLIB -i input_unstr -w work_unstr_c -g c -f -p $mpi -n $np $ww3 ww3_ufs1.1" >> matrix.body

I think they need to be wrapped in the following if statement (@JessicaMeixner-NOAA - can you confirm?):

if [ "$ufs" = 'y' ] && [ "$pdlib" = 'y' ] && [ "$dist" = 'y' ]; then

I'm happy to raise this a separate PR if you prefer!

@JessicaMeixner-NOAA
Copy link
Collaborator

Good catch @ukmo-ccbunney those should be behind UFS if statements. If @mickaelaccensi doesn't include this in this PR I can also make a separate PR to fix this.

Copy link
Collaborator

@MatthewMasarik-NOAA MatthewMasarik-NOAA left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This PR passes the regtests.

Also, it's confirmed that the ww3_prtide message (see code snippit) is no longer present.

cp: cannot stat ‘/.../bin/ww3_prtide’: No such file or directory

Matrix resutls
Only the known non-b4b.

**********************************************************************
********************* non-identical cases ****************************
**********************************************************************
mww3_test_03/./work_PR1_MPI_e                     (1 files differ)
mww3_test_03/./work_PR3_UQ_MPI_e_c                     (1 files differ)
mww3_test_03/./work_PR3_UNO_MPI_e                     (1 files differ)
mww3_test_03/./work_PR2_UQ_MPI_e                     (1 files differ)
mww3_test_03/./work_PR2_UNO_MPI_d2                     (17 files differ)
mww3_test_03/./work_PR1_MPI_d2                     (7 files differ)
mww3_test_03/./work_PR3_UNO_MPI_d2_c                     (11 files differ)
mww3_test_03/./work_PR3_UQ_MPI_d2_c                     (16 files differ)
mww3_test_03/./work_PR3_UNO_MPI_d2                     (14 files differ)
mww3_test_03/./work_PR2_UQ_MPI_d2                     (14 files differ)
mww3_test_03/./work_PR3_UQ_MPI_e                     (1 files differ)
mww3_test_03/./work_PR3_UQ_MPI_d2                     (16 files differ)
ww3_tp2.10/./work_MPI_OMPH                     (7 files differ)
ww3_tp2.16/./work_MPI_OMPH                     (4 files differ)
ww3_ufs1.3/./work_a                     (3 files differ)
 
**********************************************************************
************************ identical cases *****************************
**********************************************************************

Code Review
PASS

Regtests
PASS

@MatthewMasarik-NOAA
Copy link
Collaborator

I will merge this PR as is since the review has been done.

Chris had a good tip though for a fix (#1049 (comment)) regarding the ww3_ufs test selection, fyi @mickaelaccensi @ukmo-ccbunney @JessicaMeixner-NOAA

@MatthewMasarik-NOAA MatthewMasarik-NOAA merged commit 1cacc43 into NOAA-EMC:develop Jul 31, 2023
2 of 4 checks passed
miguelsolanocordoba added a commit to wavespotter/WW3 that referenced this pull request Apr 19, 2024
* Bugfix - initialised VD and VS to zero in w3srcemd. (NOAA-EMC#1037)

* More efficient test for binary files in matrix.comp (NOAA-EMC#1035)

* Tidy up of pre-processor directives and unused variables in w3srcemd.F90 (NOAA-EMC#1010)

* Correct typo in w3srcemd.F90 pre-processor directive. (NOAA-EMC#1039)

* minor bugfix for matrix grepping on keywords (NOAA-EMC#1049)

* Stop masking group 1 output where icec > icen (NOAA-EMC#1019)

* Doxygen documentation added, 8th subset.(NOAA-EMC#1046)

* NC4 ,F90 ,XX0 switches removed from ww3_tp2.19 regtest (NOAA-EMC#1054)

* CI:  Fix for Intel scripts. GNU scripts updated. (NOAA-EMC#1064)

* correct the computation of QP parameter, add QKK output parameter, change UST scale factor (NOAA-EMC#1050)

* correct issue with ww3_multi when requesting restart2 and using nml file instead of inp file (NOAA-EMC#1070)

* correct calendar for track netcdf output (NOAA-EMC#1079)

* Fix missing mod_def.ww3 file in multigrid regression tests for track output (NOAA-EMC#1091)

* STAB3: fix cmake build for ST4 or ST3 (NOAA-EMC#1086)

* new feature to output out_grd.ww3, out_pnt.ww3 and mod_def.ww3 both in binary and ascii format using switch ASCII. (NOAA-EMC#1089)

* Update local unit number arrays (NDS, MDS) to be same size of array defined in w3odatmd (size=15). Also, defined unit numbers for NDS(14) and NDS(15). (NOAA-EMC#1098)

* Removed code referencing PHIOC in output section for PHICE in ww3_ounf (NOAA-EMC#1093)

* implementation of the GQM (Gaussian Quadrature Method) to replace the DIA in NL1 or NL2. (NOAA-EMC#1083)

* update logic to ensure you are not accessing uninitialized dates (NOAA-EMC#1114)

* Initialised S and D arrays in W3SDB1 before potential early return if zero energy. (NOAA-EMC#1115)

* ww3_ounp.F90:  x/y units attribute corrected from 'm' to 'km' (NOAA-EMC#1088)

* Bugfix: Assign unit numbers to ASCII gridded/point output in multi-grid mode. (NOAA-EMC#1118)

* correct bugs to run correctly GQM implementation (NOAA-EMC#1127)

* Adding documentation to w3iopo() in preparation for code for NOAA-EMC#682. (NOAA-EMC#1131)

* NCEP regtest module updates: uses spack-stack/1.5.0, includes scotch/7.0.4 (NOAA-EMC#1137)

* Minor update to ncep regtests (NOAA-EMC#1138)

* Updated intel workflow to install oneapi compilers from new location. (NOAA-EMC#1157)

* Add unit test for points I/O code. (NOAA-EMC#1158)

* Update Intel CI (relocate /usr/local; ensure intel-oneapi-mpi; use ubuntu-latest) (NOAA-EMC#1161)

* remove lookup table for ST4 to speed up computation and clean up the ST4 code (NOAA-EMC#1124)

Co-authored-by: Fabrice Ardhuin <[email protected]>

* initialize USSP_WN for mod_def (NOAA-EMC#1165)

* Introduce IC4M8 and IC4M9 to WW3 (NOAA-EMC#1176)

* clean up and add ST4 variables (NOAA-EMC#1181)

* w3fld1md.F90: fix divide by zero in CRIT2 parameter (NOAA-EMC#1184)

* ww3_prnc.F90: fix out-of-scope grid index write statement (NOAA-EMC#1185)

* Bugfix: address potential divide-by-zero in APPENDTAIL (NOAA-EMC#1188)

Co-authored-by: Denise Worthen <[email protected]>

* Provide initial drying of cells with depth < ZLIM for SMC grid. (NOAA-EMC#1192)

* Output OMP threading info to screen when running ww3_shel/ww3_multi compiled with the OMPG switch. Also fixes truncation of build.log when running run_cmake_build. (NOAA-EMC#1191)

* Added screen output showing number of threads when OMP enabled.

* update build to get more info in logs (NOAA-EMC#46)

---------

Co-authored-by: Jessica Meixner <[email protected]>

* update run_cmake_test to catch build errors and exit (NOAA-EMC#1194)

* fix merge conflicts

* Fix gustiness bug, as suggst by Pieter

* Change USTARsigma to WAM implementation

---------

Co-authored-by: Chris Bunney <[email protected]>
Co-authored-by: Mickael Accensi <[email protected]>
Co-authored-by: Benoit Pouliot <[email protected]>
Co-authored-by: Matthew Masarik <[email protected]>
Co-authored-by: Ghazal-Mohammadpour <[email protected]>
Co-authored-by: Jessica Meixner <[email protected]>
Co-authored-by: Biao Zhao <[email protected]>
Co-authored-by: Edward Hartnett <[email protected]>
Co-authored-by: Alex Richert <[email protected]>
Co-authored-by: Fabrice Ardhuin <[email protected]>
Co-authored-by: W. Erick Rogers <[email protected]>
Co-authored-by: Denise Worthen <[email protected]>
Co-authored-by: Camille Teicheira <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

run_cmake_test crashes when finding prnc input files run_cmake_test force to copy ww3_prtide
4 participants