Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
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Updated
Aug 1, 2024 - JavaScript
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
A bioinformatics tool for designing primers and generating consensus sequences in viral genome analysis. It supports processing multiple aligned genomic sequences, optimizing primers, and visualizing genome annotations.
RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.
VIral GEnome ASsembly pipelines for WGS
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Visualize microbial evolution at the SNP level!
Python tool for relative mutation rate of different genes across viral strains.
bvas: bayesian viral allele selection
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
Repository for analyses of HHV-6 reactivation using genomics
Viral genome assemble and characterisation
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
Data portal and API for Center for Viral Systems Biology (CViSB) data
Viral genome assembly pipeline for WGS using ONT
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
Detect Hepatitis A Virus Infection Clusters
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