MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
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Updated
Aug 29, 2024 - Kotlin
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
📚 Tools and databases for analyzing HLA and VDJ genes.
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Post-analysis of immune repertoire sequencing data
A collaborative review of the emerging COVID-19 literature. Join the chat here:
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
Precision HLA typing from next-generation sequencing data
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
Python package and command line tool for epitope prediction
An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
A RepSeq processing swiss-knife
A Python library for reading and writing Flow Cytometry Standard (FCS) files
A data-centric flow/mass cytometry automated analysis framework
simpler single cell RNAseq data clustering
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
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