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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 581

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 960 366

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 975 355

Repositories

Showing 10 of 1265 repositories
  • TOPMed_AFib_pipeline Public
    broadinstitute/TOPMed_AFib_pipeline’s past year of commit activity
    R 3 MIT 2 0 1 Updated Jul 22, 2024
  • beehive Public

    Beehive is a web UI for interacting with Sherlock, DSP DevOps's deployment source-of-truth service

    broadinstitute/beehive’s past year of commit activity
    TypeScript 2 BSD-3-Clause 1 0 12 Updated Jul 22, 2024
  • hidive Public
    broadinstitute/hidive’s past year of commit activity
    Rust 0 BSD-3-Clause 0 0 3 Updated Jul 22, 2024
  • warp Public

    WDL Analysis Research Pipelines

    broadinstitute/warp’s past year of commit activity
    WDL 198 BSD-3-Clause 92 9 22 Updated Jul 22, 2024
  • warp-tools Public

    This repository contains all containers that WARP uses.

    broadinstitute/warp-tools’s past year of commit activity
    Python 9 BSD-3-Clause 2 1 11 Updated Jul 22, 2024
  • sherlock Public

    DSP DevOps's deployment source-of-truth service

    broadinstitute/sherlock’s past year of commit activity
    Go 1 BSD-3-Clause 0 0 4 Updated Jul 22, 2024
  • dsp-backstage Public

    dsp-backstage is DSP-DevOps Internal Developer Platform Framework (Spotify Backstage by another name)

    broadinstitute/dsp-backstage’s past year of commit activity
    TypeScript 2 BSD-3-Clause 0 0 14 Updated Jul 22, 2024
  • juniper0 Public

    Preliminary Version of JUNIPER: Large-Scale Outbreak Reconstruction

    broadinstitute/juniper0’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 21, 2024
  • CTAT-LRF-Paper Public
    broadinstitute/CTAT-LRF-Paper’s past year of commit activity
    HTML 1 0 0 0 Updated Jul 21, 2024
  • mccarroll-cromwell Public
    broadinstitute/mccarroll-cromwell’s past year of commit activity
    Shell 0 0 0 0 Updated Jul 21, 2024
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