sequence-alignment
Here are 49 public repositories matching this topic...
Versatile open-source tool for microbiome analysis
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Jul 22, 2024 - C++
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
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Apr 19, 2023 - C++
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Jul 22, 2024 - C++
The Modular Aligner and The Modular SV Caller
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Jul 18, 2023 - C++
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Jul 27, 2022 - C++
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
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Jan 12, 2024 - C++
Fast & accurate alignment of barcoded short-reads
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Jun 29, 2023 - C++
EMERALD calculates safety-windows by exploring the suboptimal alignment space
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Mar 15, 2024 - C++
Fast pairwise sequence alignment using SeqAn, in Python.
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Mar 23, 2019 - C++
Fork of MUMmerGPU-2.0 that compiles without errors
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Aug 8, 2017 - C++
SeqALib: Sequence Alignment Library
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May 24, 2020 - C++
A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.
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Jan 16, 2023 - C++
A simple parallel implementation of Smith Waterman sequence alignment algorithm.
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Oct 24, 2017 - C++
C++/CUDA implementation of the Needleman-Wunsch algorithm
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Jan 23, 2023 - C++
A header-only templated C++17-library for fast and versatile sequence alignment computations.
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Feb 28, 2020 - C++
A bioinformatics algorithm for generating sequence alignments from 3D structures
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Feb 22, 2022 - C++
subset and spaced seed design tool
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May 2, 2024 - C++
Fast alignment of genomic sequences using Boyer-Moore with linear time construction of indexes using Z algorithm.
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Sep 24, 2019 - C++
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