Long read based human genomic structural variation detection with cuteSV
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Updated
May 31, 2024 - Python
Long read based human genomic structural variation detection with cuteSV
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
A workflow for processing CCS reads of AMF to ASVs using DADA2
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
a pacbiohifi profiler written in go porgamming language
De novo repeat inference from long reads
SMP: A Salmonella Methylation analysis Pipeline
Inter-sample analysis of SQANTI classifications
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