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PacBio

README.md

👋 to PacBio's GitHub space

Are you looking for great tools to analyze your HiFi data?

How about complete workflows for your HiFi data?

Help pages for tools that are running on our long-read platform?

This list is work in progress, check out our repositories for more greatness!

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  1. pbbioconda pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    242 44

  2. ccs ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    113 31

  3. pbmm2 pbmm2 Public

    A minimap2 frontend for PacBio native data formats

    Perl 166 25

  4. pb-metagenomics-tools pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    HTML 156 33

  5. trgt trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    Rust 94 7

  6. hifihla hifihla Public

    An HLA star-calling tool for PacBio HiFi data types

    19 1

Repositories

Showing 10 of 84 repositories
  • MethBat Public

    A battery of methylation tools for PacBio HiFi reads

    PacificBiosciences/MethBat’s past year of commit activity
    19 BSD-3-Clause-Clear 0 0 0 Updated Jul 19, 2024
  • pb-StarPhase Public

    A phase-aware pharmacogenomic diplotyper for PacBio datasets

    PacificBiosciences/pb-StarPhase’s past year of commit activity
    7 BSD-3-Clause-Clear 0 0 0 Updated Jul 19, 2024
  • HiFi-human-WGS-WDL Public
    PacificBiosciences/HiFi-human-WGS-WDL’s past year of commit activity
    WDL 46 BSD-3-Clause-Clear 24 1 2 Updated Jul 19, 2024
  • wdl-common Public
    PacificBiosciences/wdl-common’s past year of commit activity
    WDL 4 BSD-3-Clause-Clear 4 0 2 Updated Jul 19, 2024
  • IsoSeq Public

    Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

    PacificBiosciences/IsoSeq’s past year of commit activity
    185 BSD-3-Clause-Clear 62 0 0 Updated Jul 17, 2024
  • wdl-dockerfiles Public
    PacificBiosciences/wdl-dockerfiles’s past year of commit activity
    Python 3 BSD-3-Clause-Clear 0 0 3 Updated Jul 17, 2024
  • trgt Public

    Tandem repeat genotyping and visualization from PacBio HiFi data

    PacificBiosciences/trgt’s past year of commit activity
    Rust 94 7 19 0 Updated Jul 17, 2024
  • pb-metagenomics-tools Public

    Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

    PacificBiosciences/pb-metagenomics-tools’s past year of commit activity
    HTML 156 BSD-3-Clause-Clear 33 1 0 Updated Jul 16, 2024
  • HiFi-MAG-WDL Public

    WDL workflow for metagenomics

    PacificBiosciences/HiFi-MAG-WDL’s past year of commit activity
    WDL 3 BSD-3-Clause-Clear 0 0 0 Updated Jul 3, 2024
  • HiFi-human-assembly-WDL Public
    PacificBiosciences/HiFi-human-assembly-WDL’s past year of commit activity
    WDL 5 BSD-3-Clause-Clear 0 0 1 Updated Jul 3, 2024
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