JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Genome browser and variant annotation

SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

Ultrafast Sample Placement on Existing Trees

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Modular Multi-scale Integrated Genome Graph Browser

WashU Epigenome Browser

CGView.js creates interactive circular and linear genome maps.

Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

A python package for showing JBrowse views

A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

Interactive visulizations for track-based genomic data in R

A collaborative notebook for genes and genomes

JBR Genome Browser

Tools for analyzing and comparing SARS-CoV-2 phylogenies

Specifications and implementation of the TrackHub registry

Simple and fast html5 canvas based genome browser

A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly

A pipeline for the integration of DNA methylation and hydroxymethylation data