A collection of awesome things regarding all omics.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Pipelines for NGS data preprocessing by the Bock lab and friends

Project Manager for NGS data analysis

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Run Sentieon pipelines on Google Cloud Platform

CSBB - Computational Suite For Bioinformaticians and Biologists

Reconstruction and analysis of viral and host genomes at multi-organ level

A fast, easy way to present complex bioinformatics pipelines to biologists

Trimming and QC on NGS data

WDL tasks for commonly used BFX tools

A simple fastp-MultiQC nextflow pipeline

DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

🐴 CLinically Okay Metagenomic Pipeline 🐴

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

A flexible, automation and pragmatic workflow tool to process the NGS data.