Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
-
Updated
May 23, 2024 - C++
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
💾 📃 "Reads to report" for public health and clinical microbiology
De novo assembly based variant calling pipeline for Illumina short reads
🌺 reference-free transcriptome assembly for short and long reads
A WGS de novo assembler based on the FMD-index for large genomes
Standalone C library for assembling Illumina short reads in small regions
Learning to untangle genome assembly with graph neural networks.
Simple bacterial assembly and annotation pipeline
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
A simple DSL2 workflow: tutorial
Basic workflow for nanopore sequencing data
Germline DNM caller based on LdBG assembly of pathogens
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Iterative Organellar Genome Assembly
De novo assembly pipeline for 10X linked-reads using Supernova
Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine
Add a description, image, and links to the denovo-assembly topic page so that developers can more easily learn about it.
To associate your repository with the denovo-assembly topic, visit your repo's landing page and select "manage topics."