Visualizing differences between alternative multiple sequence alignments of the same dataset
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Updated
Feb 1, 2019 - Java
Visualizing differences between alternative multiple sequence alignments of the same dataset
A fast multiple sequence alignment program.
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
A statistical measure for gauging the polymorphic extent of sequences in a multiple sequence alignment.
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
GACMSA: Get Allele counts from Multiple Sequence Alignment files
A collection of phylogenetics tutorials delivered to colleagues at the Centre for Biological Control (CBC). Topics include producing Bayesian and Maximum Likelihood trees, haplotype networks, reading phylogenies into R, analysing ISSR and SSR data, and using STRUCTURE and SplitsTree.
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Library-free horizontal transfer detection, with a focus on transposable element invasions
Bioinformatic Course - Programming Assignments - Winter 2022
Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.
Detect and annotate proteoforms/domains from RNA-Seq multiple sequence alignments
Comparative Analysis of DNA sequencing Algorithm
2022 Herbstsemester Computational Biology @ ETHz
Course project: Bioinformatics (BIO) ➟ Multiple sequence alignment of 10 genetic sequences of SARS-2 (gene 3) – T-Coffee
Bioinformatics Toolbox
(Deep) Reinforcement Learning Framework to align multiple sequences.
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