Welcome to the Bioinformatics Course repository! This repository contains 6 different projects completed during my undergraduate bioinformatics course. The projects cover a range of topics in bioinformatics, including programming assignments and theoretical concepts(4 programming/theoretical and 2 pure theoretical projects).
Table of Contents
All projects are accompanied by their respective codes, necessary datasets (if required), and comprehensive documentation, which includes instructions and reports (in Persian).
Definitions and theoretical explanations of basic biological concepts in bioinformatics.
Developed semi-global protein alignment utilizing dynamic programming techniques.
Implemented a model for aligning multiple protein sequences using the Star Alignment algorithm
4. Profile - Hidden Markov Model (Programming/Theoretical))
Developed a model that extracts profiles from multiple sequence alignments and finds the optimal subsequence with the highest score based on the profile on a given long sequence.
Concepts and theoretical explanations in the field of phylogenetic trees.
Analysis and classification of DNA Sequence Using Neural Networks. This project is the implementation of this research article. Developed a virus classification model using nucleotide sequences, employing the k-mer algorithm for preprocessing and integrating MLP Neural Networks in the machine learning model.
- Course: Bioinformatics
- University: Amirkabir University of Technology (Tehran Polytechnic)
- Semester: Spring 2022
Amirmehdi Zarrinnezhad - [email protected]
Project Link: https://github.com/zamirmehdi/Bioinformatics-Course